Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01924 ATGAGAATGCTTATAACTTATGGGAACATGTTTCTCTTGCAGTTGGTGAGTGTGTTTCTGGTTCTTGCATTGTTCAGTTGTAGCCCATGGACAGTGTGGAGCAGCTCGTACTGCAATGGGATGAACTTTAAGGAAGTCCGGCCTCACAGTGTCAGTATTACCGAATTTGGGGCAGTTGGCGATGGGGTCACTCTCAATACAAAAGCTTTTCAGAATGCCATCTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCCAAGCTTTTTGTCCCCGCCGGCAGGTGGTTAACTGGAAGCTTTGATCTCATCAGCCATCTAACACTGTGGTTGGACAACGATGCTGTAATTCTTGGATCAACGAACTCCGAGGACTGGCCACTTGTGGAGCCTCTACCATCATATGGACGTGGAAGGGAGTTGCCGGGTGAAAGGCATAAAAGCCTCATTTATGGGCGTAATTTGACTGATGTTGTCATAACAGGTAACAATGGAACTGTAGATGGTCAAGGGAGTATCTGGTGGGACAAGTTTCGGAACAAAACATTGGATTATACACGTCCCCATTTGGTCGAGTTGATGAATTCAACCGGGGTTCTCATTTCAAATGTAACTTTCTTGAACTCACCATTTTGGACTATTCACCCTGTATATTGCAGCCATGTTAGAATTCATAATGTCACAGTCATTGCTCCTCATGGTTCACCAAATACAGATGGCATTAATCCAGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATCAAAAGTGGATGGGATGGATACGGCATTGCATTTGGTCGACCCAGTAGAAATATTAACATCCGTGGGCTCATTGGGAAAACAACTAGTGCGGGGATTGCTATCGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTTCATGCAGAAGATATTTACATTTTTGATTCGCATACTGCAATTAGAATAAAAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATGTCTCTAACGTGATATTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCTGATGAGAATTATGACCCAGCTGCTCTACCGGTAATAGAAAGGATTACTATCAAGGATGTAATTGGGGAAAAAGTCAAACGTGCCGGCCTTATACAGGGTATTAAAGATGACACCTTTGTCGATATCTGCCTATCAAATATCACACTTAATGTGACCTCAAAATTGCCATGGAACTGCTCTTACGTTAAAGGATATTCTGCCCTGGTTTCACCGGAAGCCTGTGAGCCTCTCAATGAGCGAATATCCCCTGACCATTGTTCCGACTGTTGCTATTTACCAAACCAAATCACGAGTTTGGTAAATCAAAACTGGGGTGCTTGGGTTTAG 1413 0.4282 MRMLITYGNMFLLQLVSVFLVLALFSCSPWTVWSSSYCNGMNFKEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDNDAVILGSTNSEDWPLVEPLPSYGRGRELPGERHKSLIYGRNLTDVVITGNNGTVDGQGSIWWDKFRNKTLDYTRPHLVELMNSTGVLISNVTFLNSPFWTIHPVYCSHVRIHNVTVIAPHGSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDGYGIAFGRPSRNINIRGLIGKTTSAGIAIGSEMSGGVSEVHAEDIYIFDSHTAIRIKTSPGRGGYVRNVYVSNVILANVDIAIRFTGLYGEHPDENYDPAALPVIERITIKDVIGEKVKRAGLIQGIKDDTFVDICLSNITLNVTSKLPWNCSYVKGYSALVSPEACEPLNERISPDHCSDCCYLPNQITSLVNQNWGAWV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01924 470 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Vimu3g01924 470 SMART pbh1 306 327 IPR006626 -
Vimu3g01924 470 SMART pbh1 218 244 IPR006626 -
Vimu3g01924 470 SMART pbh1 335 356 IPR006626 -
Vimu3g01924 470 SMART pbh1 245 277 IPR006626 -
Vimu3g01924 470 SMART pbh1 279 300 IPR006626 -
Vimu3g01924 470 SUPERFAMILY Pectin lyase-like 45 438 IPR011050 -
Vimu3g01924 470 Gene3D - 33 427 IPR012334 -
Vimu3g01924 470 PANTHER PECTIN LYASE-RELATED 24 449 - -
Vimu3g01924 470 Pfam Glycosyl hydrolases family 28 146 425 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01924 Vimu-Chr3 34220495 34223038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01924 15 451 Glycoside Hydrolase AT3G62110 68.468 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01924 - - gmx:100786985 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01924 3 34220495 34223038 Vimu3g01924 3 34220495 34223038 ECH
Vimu6g01993 6 17887324 17889685 Vimu3g01924 3 34220495 34223038 PCT