Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01990 ATGACATCTTCATTCTTTTCCATTCTTTTCTCTTTTGCTATTATCTTCTTCTCTGCACCTTTTGGAGCTGAAGCATGGTTGAAGCCCAAAATACCCATCTCTTCTCTCATCACAAAAACTCTTTTTGACTCCTTTTTCCTACACAAAGATGACACTGCATGCCCTGCTAAAGACTTCTACACCTACCACTCCTTCATTCTTGCATCAAAATCCTTCCCTGCATTTGGTACCACTGGTTGTTTAGCCACGCGCAAGCGTGAGATTGCTGCGTTTCTCGCTCAGATTTCCCATGAAACCACCGGTGGGTGGGCCACCGCACCCGATGGCCCATTTGCTTGGGGCTTGTGCTTCAAGGAAGAAATTAGTCCTCAGAGTAATTACTGTGATTCCACTAACACTCAATGGCCATGCTTCCCTGCAAAAAGTTACAAGGGAAGAGGACCGATTCAACTTTCTTGGAACTACAACTATGGACCAGCAGGGAAGGCGTTGGGATTTGATGGGTTGAGGAATCCGGAGATTGTGGCGAACAATTCCGTCATAGCCTTCAAAACAGGGCTCTGGTTTTGGATGACAGAGCAAAAGCCAAAACCTTCTTGCCACGACGTGATGGTTGGGAAATACCTGCCTACAGAAGCTGACATAGCGGCTAATCGAACATCTGGTTATGGCTTGGTCACTAACATAATCAACGGTAAACTTGAATGTGGGATTCCTGGTGATTCAAGAGTCAATGATCGGATTGGTTTTTTCCAAAGATATACAAATCTGTTCAACGTCGACACTGGACCTAACTTGGATTGTGCATATCAGCAACCCTTCTAA 825 0.4509 MTSSFFSILFSFAIIFFSAPFGAEAWLKPKIPISSLITKTLFDSFFLHKDDTACPAKDFYTYHSFILASKSFPAFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEISPQSNYCDSTNTQWPCFPAKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSVIAFKTGLWFWMTEQKPKPSCHDVMVGKYLPTEADIAANRTSGYGLVTNIINGKLECGIPGDSRVNDRIGFFQRYTNLFNVDTGPNLDCAYQQPF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01990 274 ProSitePatterns Chitinases family 19 signature 2. 181 191 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu6g01990 274 Pfam Chitinase class I 36 268 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu6g01990 274 PANTHER CHITINASE-RELATED 32 272 - -
Vimu6g01990 274 Gene3D - 40 274 - -
Vimu6g01990 274 Gene3D Endochitinase, domain 2 119 177 - -
Vimu6g01990 274 FunFam Endochitinase (Chitinase) 119 177 - -
Vimu6g01990 274 ProSitePatterns Chitinases family 19 signature 1. 54 76 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu6g01990 274 SUPERFAMILY Lysozyme-like 33 274 IPR023346 -
Vimu6g01990 274 CDD chitinase_GH19 37 268 - -
Vimu6g01990 274 PIRSF Endochitinase 17 274 IPR016283 GO:0004568|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01990 Vimu-Chr6 17859692 17860609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01990 4 274 Glycoside Hydrolase AT1G02360 69.004 1.76e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01990 - - gmx:100784196 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01990 6 17859692 17860609 Vimu3g01927 3 34246104 34247249 PCT