Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01927 ATGGCACTCTCATTCTCCTCTGAGGGTGTCTTTCTCTGCACCTTCTTATTGTTCTTGTCTTTGGGATCTGAAGCTCGTAGATCACCCGTTTCTTCTGTGGTTAGCGAAGAGCTTTTTGATTCCATTTTCCTTCACAAAGACAACGCTGCATGCCCTGCTAAAAACTTCTACACCTACGATTCCTTCATCATGGCATGCAGAAGATTCCCGGAATTTGGTTCTAGAGGTAGTTTAACCACACGCAAGCGTGAGGCTGCGGCTTTTCTTGCTCAAATTTCTCAAGAAACCACAGGTGGGTGGGCTACTGCACCCGATGGACCCTATGCTTGGGGATTGTGCTTCAAGGAAGAAGTTAGTCCTCAGAGTGACTATTGTAATTCCACCAACCAACAATGGCCTTGTTACCCAGGAACATCATACAAAGGAAGAGGACCAATTCAACTTTCATGGAATTACAACTATGGACCAGCAGGGAAGGCATTGGGATTTGATGGACTGAGAAACCCTGATGTGGTGTCAAACAATTCAGTGATTGCCTTTGAAACAGCTTTGTGGTTTTGGATGACAGAGCAAAAGCCAAAACCGTCTTGCCACAATGTGATGATTGGAAAATATGTGGCCACAGAATCTGACATAGCAGCTAATAGAACTGCAGGGTATGGTCTGGTGACTAACATAATCAATGGTGGACTTGAATGTGGAATTCCTGATGATTCAAGGGTGAATAATCGCATTGGATTCTTCAAAAGATATGCAGCATTGTTCAATGTAGATACAGGACCTAACTTGGATTGTGCATATCAGAAACCCTTTTAA 816 0.4363 MALSFSSEGVFLCTFLLFLSLGSEARRSPVSSVVSEELFDSIFLHKDNAACPAKNFYTYDSFIMACRRFPEFGSRGSLTTRKREAAAFLAQISQETTGGWATAPDGPYAWGLCFKEEVSPQSDYCNSTNQQWPCYPGTSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPDVVSNNSVIAFETALWFWMTEQKPKPSCHNVMIGKYVATESDIAANRTAGYGLVTNIINGGLECGIPDDSRVNNRIGFFKRYAALFNVDTGPNLDCAYQKPF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01927 271 ProSitePatterns Chitinases family 19 signature 1. 51 73 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu3g01927 271 CDD chitinase_GH19 34 265 - -
Vimu3g01927 271 FunFam Endochitinase (Chitinase) 116 174 - -
Vimu3g01927 271 Gene3D - 37 271 - -
Vimu3g01927 271 PIRSF Endochitinase 6 271 IPR016283 GO:0004568|GO:0005975
Vimu3g01927 271 PANTHER CHITINASE-RELATED 26 269 - -
Vimu3g01927 271 SUPERFAMILY Lysozyme-like 30 271 IPR023346 -
Vimu3g01927 271 ProSitePatterns Chitinases family 19 signature 2. 178 188 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu3g01927 271 Gene3D Endochitinase, domain 2 116 174 - -
Vimu3g01927 271 Pfam Chitinase class I 33 265 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01927 Vimu-Chr3 34246104 34247249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01927 10 271 Glycoside Hydrolase AT1G02360 70.076 1.93e-143 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01927 - - vra:106754841 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01927 3 34246104 34247249 Vimu3g01927 3 34246104 34247249 ECH
Vimu6g01990 6 17859692 17860609 Vimu3g01927 3 34246104 34247249 PCT