Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01963 ATGAAGCTCACAGCCTCCCTCCTACTATTCACTTTTGCTTTGGTGTTAACCACCATCACTGCATCAGATCCTGATCCTCTTCAAGACCTCTGTGTCGCTGATCTTGCCTCAGCTGTTAAAGTGAATGGATTCACCTGCAAAGATGCCGCGAAGGTAAATGCGTCTGATTTCTTCTCAGACATATTAGCGAAAGCAGGTGCGACAAACAACACCTATGGGTCCTTGGTGACTGCAGCCAATGTTCTGAAAATCCCAGGAGTGAACACCCTTGGTGTATCTCTGTCACGAGTTGACTATGCTCCAGGTGGGATCAACCCTCCTCACACGCACCCACGTGCCACCGAGATTGTGTTTGTGCTGGAAGGAGAACTCGATGTGGGATTCATAACCACAGCCAATGTGCTCATATCAAAGACCATCAGCAAGGGTGAGATTTTTGTGTTCCCAAAAGGCTTAGTTCACTTCCAAAAGAACAATGCAAAGGAACCTGCTTCGGTCCTTGCAGCCTTCAACAGTCAATTACCTGGCACACAGTCCATTGCTCTCACCCTCTTTACAGCCACACCACCTGTTCCAGACAATGTCTTGACTAAGGCCTTCCAGATTGGTACCAAGGAGGTTGAGAAAATCAAGTCCAGGCTTGCACCTTAG 651 0.4808 MKLTASLLLFTFALVLTTITASDPDPLQDLCVADLASAVKVNGFTCKDAAKVNASDFFSDILAKAGATNNTYGSLVTAANVLKIPGVNTLGVSLSRVDYAPGGINPPHTHPRATEIVFVLEGELDVGFITTANVLISKTISKGEIFVFPKGLVHFQKNNAKEPASVLAAFNSQLPGTQSIALTLFTATPPVPDNVLTKAFQIGTKEVEKIKSRLAP 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01963 216 Pfam Cupin 63 207 IPR006045 -
Vimu6g01963 216 FunFam germin-like protein subfamily 2 member 1 22 216 - -
Vimu6g01963 216 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Vimu6g01963 216 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Vimu6g01963 216 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Vimu6g01963 216 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Vimu6g01963 216 SMART Cupin_1_3 59 208 IPR006045 -
Vimu6g01963 216 Gene3D Jelly Rolls 22 215 IPR014710 -
Vimu6g01963 216 CDD cupin_OxOx 23 214 IPR001929 GO:0030145
Vimu6g01963 216 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 19 212 - -
Vimu6g01963 216 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01963 Vimu-Chr6 17631879 17633006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01963 8 216 Miscellaneous Gene Families AT3G05930 56.667 3.42e-84 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01963 - - gmx:100302722 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01963 6 17631879 17633006 Vimu3g01954 3 34472843 34474791 PCT