Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01954 ATGGCTAACCACACTATGAAGCTGCTCAACTTGCTTCTTCTCTTAGCCACCACCGTCTCATCAGATCCTGACCTTCTTCAAGACCTTTGTGTTGCTGACCTTGCCTCAGGTGTGAAAGTGAATGGATTCAGCTGCAAAGAAGCATCTAAGGTAAATGCTTCAGATTTCTTCTCAAACATACTAGGAAAAGCAGGATCCACCAACAACACCTTTGGGTCAATAGTGACCGGAGCCAATGTTGAGAAAGTCCCAGGATTGAACACACTTGGTGTATCTCTGTCAAGAATTGACTATGCCCCAAATGGCATAAACCCTCCTCACACTCACCCTCGTGCCACTGAGATTGTCTTTGTGCTTGAAGGCCAACTAGACGTAGGCTTCATAACCACTTCCAATGTCCTCATATCAAAGACCATTAACAAGGGTGACATATTTGTCTTTCCAAAAGGCTTAGTTCACTTCCAACAGAACAATGCCAACGTCCCTGCTGCTGTCATTTCAGCCTTCAACAGCCAACTTCCAGGAACACAGTCCATTGCTACAACCTTGTTTTCTGCCACACCTTCACTTCCCGACCATGTCTTGACCAAGACCTTCCAGGTTGGTACCGGAGTCGTTCAGAAAATCAAGTCCAGGCTTGCACCTAAGAAGTAA 654 0.4587 MANHTMKLLNLLLLLATTVSSDPDLLQDLCVADLASGVKVNGFSCKEASKVNASDFFSNILGKAGSTNNTFGSIVTGANVEKVPGLNTLGVSLSRIDYAPNGINPPHTHPRATEIVFVLEGQLDVGFITTSNVLISKTINKGDIFVFPKGLVHFQQNNANVPAAVISAFNSQLPGTQSIATTLFSATPSLPDHVLTKTFQVGTGVVQKIKSRLAPKK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01954 217 SUPERFAMILY RmlC-like cupins 22 212 IPR011051 -
Vimu3g01954 217 CDD cupin_OxOx 22 213 IPR001929 GO:0030145
Vimu3g01954 217 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Vimu3g01954 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 18 211 - -
Vimu3g01954 217 SMART Cupin_1_3 58 207 IPR006045 -
Vimu3g01954 217 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Vimu3g01954 217 PRINTS Germin signature 170 185 IPR001929 GO:0030145
Vimu3g01954 217 PRINTS Germin signature 137 157 IPR001929 GO:0030145
Vimu3g01954 217 FunFam germin-like protein subfamily 2 member 1 21 215 - -
Vimu3g01954 217 Gene3D Jelly Rolls 21 215 IPR014710 -
Vimu3g01954 217 Pfam Cupin 63 203 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01954 Vimu-Chr3 34472843 34474791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01954 8 217 Miscellaneous Gene Families AT3G05930 56.398 1.94e-85 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01954 - - gmx:100791828 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01963 6 17631879 17633006 Vimu3g01954 3 34472843 34474791 PCT