Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01954 ATGGGGCAAAAGCATTTGGTGGTGGCCTTCTGTTTATGGGCTTTAACATGTTCCCTTCTTCCATCTTTCTCCTACGGAATTCTGAAAATTGGTTTGAAGAAGAGACCTCTAGATCTTAATAGTATTAATGCTGCTAGAAAGGCAAGAGAAGGTTTAAGATCTGGAAGGCCAATTATGGGTGAACATGATCAGTTTATTGGTAAGGCAAAGGGTGAAGACAGTATACCTTTGAAAAATTATTTGGATGCTCAGTATTTTGGTGAGATTGGAATTGGCACACCCCCTCAGACCTTCACTGTTGTGTTTGATACTGGTAGTTCCAACCTTTGGGTTCCATCATCAAAATGCTACTTTTCTCTTGCTTGCTATACCCATAATTGGTATAAGCCAAAGAAATCCAGAACATATGTCAAAAATGGAACATCATGTAAAATAAACTATGGATCTGGATCAATATCTGGTTACTTCAGTCAAGATAGTGTTAAAGTTGGCAACGCTATTGTCAAGCAGCTGGATTTCATTGAAGCTACCCGAGAAGGAAGTCTTTCCTTTCTATCAGCAAAGTTCGATGGAATACTGGGACTTGGATTTCAGGAGATCTCAGTTGCAGATGCTGTTCCATTATGGTACAAAATGGTGGACCAAAATCTTATCAGTGAGAAGGTGTTTTCCTTTTGGTTGAATGGGGATCCAAATGCAAAAAAAGGCGGTGAATTAGTTTTCGGTGGTGTTAACCCAAAGCACTTTAAAGGAGACCACACTTATGTTCCAGTTACTGAAAAAGGTTACTGGCAGAAAATTCTTGAGCATGAAAGTTATCTTTTGCAGATTGAAATTGGGGATTTTTTCATTGGAGGTGCTTCTACAGGTGATTTTATTGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTCCTGTTGTAGCTGAAATCAACCATGCTATAGGAGCTGAAGGAGTTCTCAGTGTAGAATGTAAGGATGTCGTTTCTCAATATGGAGAGATGATATGGGATCTCTTGGTATCCGGGGTGAAACCTGATGACATATGTTCCCAAGTTGGTTTATGTTCTGCCAAAAGGACTCAATCTAAGAGCCCTGGGATTGAAATGGTAACTGAAAAGGAACAGAGTGAGTTGACAGCAAGAGATACTCCCTTATGTTCTTCTTGTCAGATGCTTGTTCTTTGGATCCAGAATCAACTAAAACAAAAACAAACAAAGGACAGAGTATTCAACTATGTGAATCAAGTATGCCCTTCACATTATTCCATCCACAAGCTCAAGCACTTGCCAAGTCCCTCTGGAGAGTCAGTGATAAGCTGTAACAGTCTTTCCAAGATGCCAAACATTACATTCACAATTGGAGATAAACTTTTTGTCCTTACACCAGAGCAGTATATTTTGAGAACTGGAGAAGGCATTACAGAAGTATGCCTTAGTGGGTTTATCGCTTTTGATGTTCCTCCTCCACGGGGTCCATTGTGGATTCTTGGGGATGTTTTCATGAGGGCATATCACACCATCTTTGACTATGGAAATCTCCGAGTTGGGTTTGCTGAAGCTGTGTGA 1587 0.4052 MGQKHLVVAFCLWALTCSLLPSFSYGILKIGLKKRPLDLNSINAARKAREGLRSGRPIMGEHDQFIGKAKGEDSIPLKNYLDAQYFGEIGIGTPPQTFTVVFDTGSSNLWVPSSKCYFSLACYTHNWYKPKKSRTYVKNGTSCKINYGSGSISGYFSQDSVKVGNAIVKQLDFIEATREGSLSFLSAKFDGILGLGFQEISVADAVPLWYKMVDQNLISEKVFSFWLNGDPNAKKGGELVFGGVNPKHFKGDHTYVPVTEKGYWQKILEHESYLLQIEIGDFFIGGASTGDFIGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKDVVSQYGEMIWDLLVSGVKPDDICSQVGLCSAKRTQSKSPGIEMVTEKEQSELTARDTPLCSSCQMLVLWIQNQLKQKQTKDRVFNYVNQVCPSHYSIHKLKHLPSPSGESVISCNSLSKMPNITFTIGDKLFVLTPEQYILRTGEGITEVCLSGFIAFDVPPPRGPLWILGDVFMRAYHTIFDYGNLRVGFAEAV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01954 528 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 298 309 IPR001969 GO:0004190|GO:0006508
Vimu6g01954 528 ProSiteProfiles Saposin B type domain profile. 389 430 IPR008139 -
Vimu6g01954 528 CDD phytepsin 75 526 IPR033869 GO:0004190
Vimu6g01954 528 FunFam Lysosomal aspartic protease 426 527 - -
Vimu6g01954 528 Pfam Eukaryotic aspartyl protease 84 527 IPR033121 -
Vimu6g01954 528 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Vimu6g01954 528 Pfam Saposin-like type B, region 2 330 362 IPR008138 -
Vimu6g01954 528 ProSiteProfiles Peptidase family A1 domain profile. 85 525 IPR033121 -
Vimu6g01954 528 PRINTS Pepsin (A1) aspartic protease family signature 298 309 IPR001461 GO:0004190|GO:0006508
Vimu6g01954 528 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Vimu6g01954 528 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Vimu6g01954 528 PRINTS Pepsin (A1) aspartic protease family signature 501 516 IPR001461 GO:0004190|GO:0006508
Vimu6g01954 528 SUPERFAMILY Acid proteases 16 527 IPR021109 -
Vimu6g01954 528 SUPERFAMILY Saposin 327 425 IPR011001 -
Vimu6g01954 528 FunFam Aspartic proteinase A1 28 243 - -
Vimu6g01954 528 Gene3D Acid Proteases 245 527 IPR021109 -
Vimu6g01954 528 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 18 526 IPR001461 GO:0004190|GO:0006508
Vimu6g01954 528 Pfam Saposin-like type B, region 1 391 424 IPR007856 GO:0006629
Vimu6g01954 528 Gene3D - 326 437 - -
Vimu6g01954 528 Gene3D Acid Proteases 28 243 IPR021109 -
Vimu6g01954 528 ProSiteProfiles Saposin B type domain profile. 326 366 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01954 Vimu-Chr6 17543999 17547242 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01954 K08245 - gmx:548009 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01954 6 17543999 17547242 Vimu6g01954 6 17543999 17547242 ECH
Vimu6g01954 6 17543999 17547242 Vimu3g01971 3 34674512 34677894 PCT