Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01971 ATGTATGGCAGATTCTCCTTGAAGATGGGGAACACGTATTTTATGTTAACCTTTTGTTTGTGGGCTTTGGCATGCTCACTTCTTCCTTCTTTCTCGTGTGGACTTATGAGAATTGGTTTGAAGAAGAGAGATGTGGATCTTGATAGTATCAGAACAGCTAGAATGCTACGAGGAAAACTAAGATTAGGCAGACCTGTGTTGGGTGCTTATGATCAGTATGTTGGCAAACCAACCGAAGAGGGCATAGTACCTTTGAAGAATTATTTGGATGCACAATATTATGGAGAGATTGGAATTGGCACACCTCCGCAGAAATTTAATGTCATATTTGATACTGGTAGTTCCAACCTATGGGTTCCATCATCAAAGTGCTATTTTTCTCTTGCCTGCTATACCCATAAATGGTACAAGCCAAAGAAGTCCAAAACGTATATAAAAAATGGAACATCATGTAAAATAACCTACGGATCTGGATCAATATCTGGTTTTTTCAGTACAGATAATGTTAAAGTTGGTGATATTGTTGTCAAGAAACAGGATTTCATTGAGGCAACTCGAGAAGGAAGTCTTTCCTTTCTGTTAGCGAAGTTTGATGGATTACTTGGCCTTGGGTTTCAGGAGATCTCTGTTGGAAGTGCTGTGCCAGTATGGTACAATATAGTGCAGCAAAATCTTGTAAGTGAGCAGGTGTTCTCTTTTTGGCTCAATGGCGATCCAAATTCAAAAGAGGGTGGAGAACTAGTTTTTGGAGGTGTTGATCCAAAACACTTCAAGGGAAATCACACCTATGTCCCAGTCACCACAAAAGGCTACTGGCAGATTGAAATGGGAGATTTTTTAATCGGAGGTCTCTCAACAGGTGTCTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTGCTGTTGTAACTGAAATCAATCATGCAATTGGAGCCGAAGGAGTTCTAAGCGTAGAGTGTAAGGAAGTTGTTTCTGAATATGGAGAAATGTTATGGGATCTCTTGATATCAGGAGTACGACCTGATGATGTGTGCTCACAGGTTGGTTTATGTTTCGCCCAAAAAGGTCAATCAGAGAGTAATGGAATTGAGATGGTGACTGAAAAGGAACAGAGAGAGTTGTCAGCTAAAGATACTGCTCTGTGTGCTCCCTGTCAGATGCTTGTGATTTGGATTCAGAATCAACTAAAACAACAGAAGACAAAGGACACAGTTTTCAACTATGTCAATCAGCTGTGCGAGAGCTTGCCAAGTCCAAATGGAGAGTCAGTAGTTAACTGTAATGGCATTTCTGGATTACCAAACATCACATTTACTGTTGGAGACAAACCTTTCACCCTCACTCCCGAGCAGTATATTCTGAAAACTGGAGAAGGCATTGCAGAAGTTTGCCTTAGTGGGTTTATTGCTTTTGACATTCCTCCTCCACGGGGTCCTCTTTGGATTCTTGGAGATGTTTTCATGAGGGTGTATCACACTGTCTTTGACTATGGCAATCTCCGAGTTGGTTTCGCCAAAGCTGCATAA 1551 0.4152 MYGRFSLKMGNTYFMLTFCLWALACSLLPSFSCGLMRIGLKKRDVDLDSIRTARMLRGKLRLGRPVLGAYDQYVGKPTEEGIVPLKNYLDAQYYGEIGIGTPPQKFNVIFDTGSSNLWVPSSKCYFSLACYTHKWYKPKKSKTYIKNGTSCKITYGSGSISGFFSTDNVKVGDIVVKKQDFIEATREGSLSFLLAKFDGLLGLGFQEISVGSAVPVWYNIVQQNLVSEQVFSFWLNGDPNSKEGGELVFGGVDPKHFKGNHTYVPVTTKGYWQIEMGDFLIGGLSTGVCEGGCAAIVDSGTSLLAGPTAVVTEINHAIGAEGVLSVECKEVVSEYGEMLWDLLISGVRPDDVCSQVGLCFAQKGQSESNGIEMVTEKEQRELSAKDTALCAPCQMLVIWIQNQLKQQKTKDTVFNYVNQLCESLPSPNGESVVNCNGISGLPNITFTVGDKPFTLTPEQYILKTGEGIAEVCLSGFIAFDIPPPRGPLWILGDVFMRVYHTVFDYGNLRVGFAKAA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01971 516 Gene3D Acid Proteases 36 251 IPR021109 -
Vimu3g01971 516 FunFam Lysosomal aspartic protease 79 321 - -
Vimu3g01971 516 Pfam Eukaryotic aspartyl protease 92 515 IPR033121 -
Vimu3g01971 516 SUPERFAMILY Acid proteases 27 515 IPR021109 -
Vimu3g01971 516 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 108 119 IPR001969 GO:0004190|GO:0006508
Vimu3g01971 516 Gene3D Acid Proteases 252 516 IPR021109 -
Vimu3g01971 516 PRINTS Pepsin (A1) aspartic protease family signature 295 306 IPR001461 GO:0004190|GO:0006508
Vimu3g01971 516 PRINTS Pepsin (A1) aspartic protease family signature 245 258 IPR001461 GO:0004190|GO:0006508
Vimu3g01971 516 PRINTS Pepsin (A1) aspartic protease family signature 489 504 IPR001461 GO:0004190|GO:0006508
Vimu3g01971 516 PRINTS Pepsin (A1) aspartic protease family signature 99 119 IPR001461 GO:0004190|GO:0006508
Vimu3g01971 516 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 78 514 IPR001461 GO:0004190|GO:0006508
Vimu3g01971 516 CDD phytepsin 83 514 IPR033869 GO:0004190
Vimu3g01971 516 Pfam Saposin-like type B, region 1 389 425 IPR007856 GO:0006629
Vimu3g01971 516 Gene3D - 323 425 - -
Vimu3g01971 516 ProSiteProfiles Saposin B type domain profile. 386 427 IPR008139 -
Vimu3g01971 516 SUPERFAMILY Saposin 324 425 IPR011001 -
Vimu3g01971 516 ProSiteProfiles Saposin B type domain profile. 323 363 IPR008139 -
Vimu3g01971 516 Pfam Saposin-like type B, region 2 327 359 IPR008138 -
Vimu3g01971 516 ProSiteProfiles Peptidase family A1 domain profile. 93 513 IPR033121 -
Vimu3g01971 516 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Vimu3g01971 516 FunFam Lysosomal aspartic protease 367 515 - -
Vimu3g01971 516 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 295 306 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01971 Vimu-Chr3 34674512 34677894 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01971 K08245 - gmx:547993 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01971 3 34674512 34677894 Vimu3g01971 3 34674512 34677894 ECH
Vimu6g01954 6 17543999 17547242 Vimu3g01971 3 34674512 34677894 PCT