Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01952 ATGTCTTCCGCCACCGATAACCATATCCACGAAAACAACCACCACAACGGTTCTTGCATGGCCAAAAAGCCCAAACTCTCCTCCTCCGTTATAACGGCCTCGGAAATCGAAACCGAATTTGGCCACCACGACACCTCCGTCGCGCGCATCAATAACGGCAGCTTCGGTTGCTGCCCTGCCTCCATCATCGCCGCGCAGCACCGCTGGCAGCTCCGGTACCTCCGCCAGCCCGACCACTTCTACTTCAATGACCTTAAAACGGGCATCCTCCAATCGCGAACCCTAATCAAGGACCTCGTCAACGCCGACCACGTCGATGAGATCTCCATTGTCGACAACGCCACCACCGCTGCCGCCATCGTCCTCCAGCACACCGCATGGAACTTCCGCGAAGGAAGATTCCAGAAAGGTGATGTCGTCCTCATGCTTCACTACGCTTACGGTGCCGTCAAGAAATCCATGGAAGCGTACGTCACTCGCGCCGGAGGCAATGTTGTCGAGGTTCCCCTCCCTTTCCCTGTTAACTCCAACGACGAGATCGTTTCCGAGTTTAGGAAGGCCTTGGAGAGAGGAAAAAGTAACGGAAATAGGGTTAGATTAGCGGTGATTGATCACGTGACTTCCATGCCGTGTGTGGTTATTCCTGTCAAGGAGTTGATTCAAATTTGCAGGGAGGAGGGGGTGGACCAGGTTTTTGTTGACGCTGCTCATTCCATTGGATGCACTGATGTTGACATGAAGGAAATTGGTGCTGATTTTTACACTAGCAATTTGCATAAGTGGTTCTTTTGTCCACCTTCAATTGCGTTTCTGTATACTCGTATGAACTCTAAGGGTTCTGTTTCTGATTTACATCACCCTGTGGTGTCTCATGAGTATGGCAATGGCTTGGCTGTGGAGAGTGCTTGGATTGGGACCAGGGATTATAGTGCACAGTTGGTTGTTCCTGCTGCGGTGGAGTTTGTTAACCGGTTTGAAGGGGGTATTGAGGGGATCAAGAAGAGGAATCACGAGGCTGTTGTGGAGATGGGGGAGATGTTGGCAAAGGCATGGGGTACTCGTCTCGGGAGTCCGGCACATATGTGTGCTAGCATGGTTATGGTTGGTTTGCCTGTTTGTTTGGGGATTGGAAGTGATTCTGATGCTCTCGAGTTGAGAACACATTTGAGGGATGCTTTTGGAGTTGAGGTTCCGCTTTATTATCGGCCCCCAAGAGAGGGGGAAGTTGGGGTGATTACTGGGTATGCCCGAATTTCTCATCAAGTGTATAACAAAGTTGATGACTATTACAAGTTCAGAGATGCGGTTAGCCAACTTGTGCAAAATGGGTTCACGTGTGCTGATCTTTCGGGTTGA 1356 0.5059 MSSATDNHIHENNHHNGSCMAKKPKLSSSVITASEIETEFGHHDTSVARINNGSFGCCPASIIAAQHRWQLRYLRQPDHFYFNDLKTGILQSRTLIKDLVNADHVDEISIVDNATTAAAIVLQHTAWNFREGRFQKGDVVLMLHYAYGAVKKSMEAYVTRAGGNVVEVPLPFPVNSNDEIVSEFRKALERGKSNGNRVRLAVIDHVTSMPCVVIPVKELIQICREEGVDQVFVDAAHSIGCTDVDMKEIGADFYTSNLHKWFFCPPSIAFLYTRMNSKGSVSDLHHPVVSHEYGNGLAVESAWIGTRDYSAQLVVPAAVEFVNRFEGGIEGIKKRNHEAVVEMGEMLAKAWGTRLGSPAHMCASMVMVGLPVCLGIGSDSDALELRTHLRDAFGVEVPLYYRPPREGEVGVITGYARISHQVYNKVDDYYKFRDAVSQLVQNGFTCADLSG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01952 451 Gene3D - 60 324 IPR015421 GO:0003824
Vimu6g01952 451 MobiDBLite consensus disorder prediction 1 23 - -
Vimu6g01952 451 Pfam Aminotransferase class-V 84 367 IPR000192 -
Vimu6g01952 451 PANTHER L-CYSTEINE DESULFHYDRASE 29 447 - -
Vimu6g01952 451 SUPERFAMILY PLP-dependent transferases 44 440 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01952 Vimu-Chr6 17532564 17536865 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01952 K22207 - gmx:100786129 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01952 6 17532564 17536865 Vimu6g01952 6 17532564 17536865 ECH
Vimu6g01952 6 17532564 17536865 Vimu3g01974 3 34706234 34709616 PCT