Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01974 ATGGCTTCCACCGAACACCAAAACGGCGACGCAGTTTCCCATCCCCACAAGAAGTTAAAGCCCACCAATTTCATCACCGACGCCGAGATCCAATCTGAATTCTCCCACCACGACCCCGCCGTGGCGCGCCTCAACAACGGCGCCTTCGGCTGCTGCCCGGCCTCCGTCCTCGCCGTGCAGCGCGACTGGCAGCTCAAGAACCTCCGCCAGCCGGACCAATTCTACTTCAACCACCTCAAGAGCGGCCTCCTCCGCTCCCGCACCATCATCAAGGACCTGGTCAACGCCCACCACGTGGACGAGATCTCCCTCGTCGACAACGCCTCCACCGCCACCGCCATCGTCCTCCAGCAGGCCGCCTGGGCCTTCCACGACGGAACCTTCCAGAAGGGCGACGTCGTCCTCATGCTGCACTACGCCTACGGAGCCGTAAAGAAAGCCATCGAGGCCTACGTGGTTCGTGCCGGCGGCTCCGTCGTCGTGGTCCCCCTCCGCTTCCCGGTAACCTCCAACGACGAAATCGTCCGCGAGTTTCGCAAGGCCATCGAGAAAGGAAAGTCCCGAGGTAACAGAATCCGCTTGGCGGTTATCGACCACGTGACTTCCATGCCCAGCGTGGTCATTCCCGTTAAGGAGTTAGTTACGCTCTGCAGGGAGGAGGGGGTGGAGCAGGTTTTCGTTGACGCGGCGCACGCGATTGGGTGCACGCGAGTGGATATGCAAGAGATTGGCGCGGATTTCTATACCAGCAATTTGCATAAGTGGTTCTTCTGCCCCCCTTCCGTGGCGTTCCTCTACGCACGTGCGTCGCCGAAGTCACGTGACCTGCACCACCCCGTTGTGTCTCACGAGTACGGGAATGGGTTAGCGGTGGAGAGTTCTTGGACCGGGAACCGGGACTACAGTGCGCAGTTGGTGGTTCCTGCGGTTATGGATTTCGTGAAGAGGTTCGAAGGAGGAATCGAAGGGATCAGAAAAAGGAACCATGATGTTGTGGTTGAGATGGGGAAGATGTTGGTGGAGGCTTGGGGAACCCATCTCGGAACTCCTCCTGACATGAGTGCTAGCATGGTGATGGTAGGTTTGCCTCCATGTTTGGGGATTATGAGTGATTCTCATGCTCTCAAACTTAGGACTCGTTTGAGAGATGAGTTTGGAGTTGAAGTTCCCATTTATTTCGCTGGAGGAGAAGAAGACGCCACTGTTACTGCCTATGCCCGAATTTCTCGCCAGGTTTACAACAAACTTGAAGACTATCTTAAGTTTAAGGATGCAATTAATCAACTTGTCACCGATGGCTTCACCTGTGCTCTTCTTTCCGATTGA 1326 0.5626 MASTEHQNGDAVSHPHKKLKPTNFITDAEIQSEFSHHDPAVARLNNGAFGCCPASVLAVQRDWQLKNLRQPDQFYFNHLKSGLLRSRTIIKDLVNAHHVDEISLVDNASTATAIVLQQAAWAFHDGTFQKGDVVLMLHYAYGAVKKAIEAYVVRAGGSVVVVPLRFPVTSNDEIVREFRKAIEKGKSRGNRIRLAVIDHVTSMPSVVIPVKELVTLCREEGVEQVFVDAAHAIGCTRVDMQEIGADFYTSNLHKWFFCPPSVAFLYARASPKSRDLHHPVVSHEYGNGLAVESSWTGNRDYSAQLVVPAVMDFVKRFEGGIEGIRKRNHDVVVEMGKMLVEAWGTHLGTPPDMSASMVMVGLPPCLGIMSDSHALKLRTRLRDEFGVEVPIYFAGGEEDATVTAYARISRQVYNKLEDYLKFKDAINQLVTDGFTCALLSD 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01974 441 SUPERFAMILY PLP-dependent transferases 35 430 IPR015424 -
Vimu3g01974 441 Gene3D - 55 376 IPR015421 GO:0003824
Vimu3g01974 441 PANTHER L-CYSTEINE DESULFHYDRASE 23 437 - -
Vimu3g01974 441 Pfam Aminotransferase class-V 85 271 IPR000192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01974 Vimu-Chr3 34706234 34709616 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01974 K22207 - gmx:100796732 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01952 6 17532564 17536865 Vimu3g01974 3 34706234 34709616 PCT