Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01950 ATGGCCAAGGAACCTTCTCTATGCCTCTTCTTCCTCTCTTTTCTCATTCTCCTTTCTTCCGGAACTGCATCTTCACCCTCTGTTGCTGCCTCATTCCTCCAACGAAGCAAGATCTTCAAATCTCAGATTCGGTTTTCTGTTTCTGACTACAAGATTTTGACCACTCTCACAGGCACCAACCTGTCAGTTGATTTCTTCTTAAACGAAAATTTTGTTTCTTCAAAATCATCTCCAGTTGCACGGATGAAAGTTCATCTTTTGAACATTCTTCCCCAAGTGGACATCCGCAGCGTCATTGTTAGATGTGGCAGTGAGTGCTTAGGCCGAGATGAGATGCCTTTGCTCGTACCTGTTATGGAATCAATTCATTCGTTTCTCAGCAATCTTCAACTGGGGAGGGAAGTAAAAGTCTCCGTGGCATTTCCGCTTTCGTTCTTGGAGAATTTGAATGCATCACATGAAAATGATCTTCTTAAGATTGTTGCGTTTGTAAAGAAAATAGATTCATTTATCATGCTGGAAGACGCCAATGATGGGGAATTGGGAACTGTTCGATCTGTTATTGAAAGAACCACACTTACTTCTATTCTTCCTTGCAAAGATGTCCCTGTGGTTTTCACAATCAAGAGCCGTGATATTCCCAGTTCAAAGGAATTAACTCAGTTTAGAGGGGCAGTACTCAAATATCTTGGAGCAGGATCTCATTTTACTAAAAGAATTTCTGCGTTGTGTGCAGAAGTACAGACAACCAAAGGTTTTGTACTGGAAGATCTCAAAAGAGGAGAGGGAGAAGGGATAATTCCTTTGATCCTGAGAAAAAAGCCAAGCAAAGTCCACATCAGAAGAATTCTTCAAGTCACAAACAACTCACCTACCACAGTTTCCCCCACAAATCCAACCCCACCTGCACCAGTCATCTCACCTCCAGATACACCAACCATCATCACAGTTCCTTCCACCAATCCTGTCACAGTTTCCCCCACTAATCCAGGGGCAACACCTGTGACAGTTCCTTCTACCACACCAGCTTCTCCCTTAGCACCCACAAATCCAGCTAATCCAGGGCCTCAATCAGTTACCAACCCTGCTACCTCATATCCACCCCCATCAGGAAATGGTCCTGTCACAAATGCCCTTCCTCCTCCTCCAAACACAAATGCTCAAGCCACGCCTGGGGGCCAGAGTTGGTGTGTGGCAAAGACTGGAGTTTCAGAAGCTACTCTTCAAACAGCATTGGACTATGCTTGTGGAATGCCAAGTGTAGATTGTTCACAAATACAGCAAGGTGGGAGTTGTTACAATCCAAATTCAATACAAAACCATGCTTCTTTTGCCTTCAATAGCTACTACCAGAAGAATCCTGCGTCAACAAGCTGTGACTTTGGAGGCGCTGCAACCATAGTTAACACCAATCCAAGTTCGGGTTCATGCATTTACCCATCTTCTTCAGGGGCAGGCACATCCGGCTCTAATGGCTCACCTTCAGTTTTAGGATCCCAAAGTCCTCCTGATTTAAATACCTCAAATTCAGCTGGTCTGAGGCCTTCTATTAACTTTATGGTTCTGGTGGTATTATCCTTAGTCAGCATAAGACTCACTATATGA 1605 0.4411 MAKEPSLCLFFLSFLILLSSGTASSPSVAASFLQRSKIFKSQIRFSVSDYKILTTLTGTNLSVDFFLNENFVSSKSSPVARMKVHLLNILPQVDIRSVIVRCGSECLGRDEMPLLVPVMESIHSFLSNLQLGREVKVSVAFPLSFLENLNASHENDLLKIVAFVKKIDSFIMLEDANDGELGTVRSVIERTTLTSILPCKDVPVVFTIKSRDIPSSKELTQFRGAVLKYLGAGSHFTKRISALCAEVQTTKGFVLEDLKRGEGEGIIPLILRKKPSKVHIRRILQVTNNSPTTVSPTNPTPPAPVISPPDTPTIITVPSTNPVTVSPTNPGATPVTVPSTTPASPLAPTNPANPGPQSVTNPATSYPPPSGNGPVTNALPPPPNTNAQATPGGQSWCVAKTGVSEATLQTALDYACGMPSVDCSQIQQGGSCYNPNSIQNHASFAFNSYYQKNPASTSCDFGGAATIVNTNPSSGSCIYPSSSGAGTSGSNGSPSVLGSQSPPDLNTSNSAGLRPSINFMVLVVLSLVSIRLTI 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01950 534 Pfam X8 domain 396 466 IPR012946 -
Vimu6g01950 534 Gene3D Glycosidases 18 175 - -
Vimu6g01950 534 MobiDBLite consensus disorder prediction 320 391 - -
Vimu6g01950 534 MobiDBLite consensus disorder prediction 320 343 - -
Vimu6g01950 534 SMART X8_cls 395 479 IPR012946 -
Vimu6g01950 534 MobiDBLite consensus disorder prediction 488 509 - -
Vimu6g01950 534 Gene3D - 392 486 - -
Vimu6g01950 534 MobiDBLite consensus disorder prediction 361 387 - -
Vimu6g01950 534 PANTHER BETA-1,3 GLUCANASE 391 490 IPR044788 -
Vimu6g01950 534 FunFam Glucan endo-1,3-beta-glucosidase 4 390 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01950 Vimu-Chr6 17521489 17523923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01950 340 481 Glycoside Hydrolase AT4G26830 41.875 3.55e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01950 - - gmx:100789503 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01950 6 17521489 17523923 Vimu6g01950 6 17521489 17523923 ECH
Vimu6g01950 6 17521489 17523923 Vimu3g01986 3 34765734 34768203 PCT