Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01986 ATGGCCAAGGAAGCTTCTCTGTGCCTCTTGTTTCTCTTCTTCCTCATTATCTCCTGTTCTGGATCTCTGGTGGGTTTTTCCTACCGTGAGAGGGGAGATACTTCAACTTCTGCTAAAACCATATCGTTCCTCCAGCAAAAGAACGTTTCCATGTCTCAGATTCGAATTTTTGTTACAGATCATAGGATTTTGAGCAGTCTCAGCAATTCCATCGTGCCAACTGATTTGTACTTGAACAGAAGTCAAGTTCAAAGTTTAATTACTTCAAAACCCTCCGAACTGAAAGCCCGTCTACTCAACTTTCTCCCACATTCACGCATCAAAAGCATCATCGCTAGCTGTGGCAATGAGTGCTTAGCACAAAATGAGATGCCTTTGTTCTCACGTGCTTTGAAATCAATTAGTTCAGTTCTCAGAGAGCTTCATATAGGGAGGGAGGTAAAAATCTCAGTAGCATTTCCACTTTCATACTTAGAAAAGTTGAACACATCGCATGAAAATAGTATTCGCAGAATTCTTTCATTCATAAGGGAAATGAAATCCTTTGTCATGGTAGAAGACAACATTGATGGAGAATTAAGCATGGAGAGTCACTTTGATCAGGCTATAATCAAACGAGCCACTCTTGCTGCTTCCATTCTTCCTTGCAAAGATGTTCCTATTGTTTTAACAATGAAGAGCATAGTTGCCTCCACTTCAATGGAATTAGCTCAATTCAGTGAGAGGGTATCCAAATATCTAGAAGCAAAAGCTCATATTACAAAAAGAATAGCTGCATTATATGCAGAAGTTCATAGAACAGAAGATTTAGCAAGTAAAGAACTCAAAAGGGAAGAGGAAGAACTGTTTCCTGTCTCCCGCAGAGAGATGCTAAGTGAATCCCACAAAAGGAGAAGTCTAGATGATACAACCAGTCCAACAAACGTAGTTTTCCCCACAAATCCAGCATCATCGACACCAATAATCACACCCCCAGATACACCAACCATCATCACAGTTCCTGCCACAAATCCTGTCACAATTTCCCCTTCCAATCCTGCTGGAGTGCCTGTCACAGTTCCTTCTACCACACCTGTGACTTTTCCTCCCACAAATCCAGCCAATACACCAGTACCAGTGAGCAATCCGGCTACAACAACTCCTGTAGGGATACCACCCCCAACAACCAACCCTGTGACTTCTCCACCTTCATCAGGAAATGTTCCTGTCACAAATCCCCAACCTCAACCACCTCCTGCAAACACTAATGCTCCAGTCATTCAGGGGCAGAGTTGGTGTGTGGCAAAGCAAGGAGCTCCTGAAGCTTCTCTTCAAGCAGCACTAGACTATGCTTGTGGAATGGGTGGGTCAGATTGTTCTCAAATTCAGCAGGGTGGGAATTGTTACAGTCCAGTTACATTGCAGAACCATGCCTCTTTTGCCTTCAACAGCTACTATCAAAAGAATCCAGCTCCAACAAGCTGCGACTTTGGAGGAACTGCCACCTTAGTTAACACAAATCCAACAACTCCAAAGTCACCACCCCCAACACCACCTACACAATCAAGTCCAACACTACCACCACCAAGTCCAGTAACACCTACATCAATTCCAACAGCACCACCAACAACATCAGTAACAGGCCCATTTGGGTATGGCACCCCACCTTCAGTGTTAAATTCAAGCAACCCCGCGTCAGGTACAATGCCAGATTTTGGATCTGAAAGCCCTCCTGTTGTAAATACAACATCAGCCTCGCATTCTATGAGCTTGAGACCTTCTGCTGGCTGCATTCTTCTGATGGTATCATTTGTCACTATGAGACTTGCTATGCATGCATAG 1821 0.4382 MAKEASLCLLFLFFLIISCSGSLVGFSYRERGDTSTSAKTISFLQQKNVSMSQIRIFVTDHRILSSLSNSIVPTDLYLNRSQVQSLITSKPSELKARLLNFLPHSRIKSIIASCGNECLAQNEMPLFSRALKSISSVLRELHIGREVKISVAFPLSYLEKLNTSHENSIRRILSFIREMKSFVMVEDNIDGELSMESHFDQAIIKRATLAASILPCKDVPIVLTMKSIVASTSMELAQFSERVSKYLEAKAHITKRIAALYAEVHRTEDLASKELKREEEELFPVSRREMLSESHKRRSLDDTTSPTNVVFPTNPASSTPIITPPDTPTIITVPATNPVTISPSNPAGVPVTVPSTTPVTFPPTNPANTPVPVSNPATTTPVGIPPPTTNPVTSPPSSGNVPVTNPQPQPPPANTNAPVIQGQSWCVAKQGAPEASLQAALDYACGMGGSDCSQIQQGGNCYSPVTLQNHASFAFNSYYQKNPAPTSCDFGGTATLVNTNPTTPKSPPPTPPTQSSPTLPPPSPVTPTSIPTAPPTTSVTGPFGYGTPPSVLNSSNPASGTMPDFGSESPPVVNTTSASHSMSLRPSAGCILLMVSFVTMRLAMHA 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01986 606 MobiDBLite consensus disorder prediction 288 325 - -
Vimu3g01986 606 MobiDBLite consensus disorder prediction 303 317 - -
Vimu3g01986 606 MobiDBLite consensus disorder prediction 379 393 - -
Vimu3g01986 606 MobiDBLite consensus disorder prediction 532 581 - -
Vimu3g01986 606 Gene3D Glycosidases 24 211 - -
Vimu3g01986 606 PRINTS Proline rich extensin signature 351 363 - -
Vimu3g01986 606 PRINTS Proline rich extensin signature 395 411 - -
Vimu3g01986 606 PRINTS Proline rich extensin signature 312 328 - -
Vimu3g01986 606 PRINTS Proline rich extensin signature 365 386 - -
Vimu3g01986 606 PRINTS Proline rich extensin signature 492 517 - -
Vimu3g01986 606 SMART X8_cls 424 507 IPR012946 -
Vimu3g01986 606 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vimu3g01986 606 MobiDBLite consensus disorder prediction 401 415 - -
Vimu3g01986 606 MobiDBLite consensus disorder prediction 288 302 - -
Vimu3g01986 606 PANTHER BETA-1,3 GLUCANASE 420 510 IPR044788 -
Vimu3g01986 606 MobiDBLite consensus disorder prediction 490 581 - -
Vimu3g01986 606 Gene3D - 419 512 - -
Vimu3g01986 606 FunFam Glucan endo-1,3-beta-glucosidase 4 419 509 - -
Vimu3g01986 606 MobiDBLite consensus disorder prediction 362 415 - -
Vimu3g01986 606 Pfam X8 domain 425 495 IPR012946 -
Vimu3g01986 606 MobiDBLite consensus disorder prediction 502 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01986 Vimu-Chr3 34765734 34768203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01986 386 510 Glycoside Hydrolase AT2G05790 47.656 1.62e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01986 - - gmx:100781884 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01986 3 34765734 34768203 Vimu3g01986 3 34765734 34768203 ECH
Vimu6g01950 6 17521489 17523923 Vimu3g01986 3 34765734 34768203 PCT