Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01945 ATGGGGACTGAAAATCCTGGTCGTCCAACCTTTCCTTCAAGGCCTTCTCCACCGCCTTTTCCTGCTGCACAGACAGTGACACCCTTTTCATCAACCGGTTCCGTCGTTGGATCAGAGCCTCCTTCTTTTCGGCCCGCTCCTCCGGCTCCTTCTTCGCAAGCCGCCTCTCCATTTTCCTCAGCAGGACCTGCTGCAGCTGGACCAGGGGCACCCGGTTTTAGACCTGCACCACCAGGGAGGTTCAATGATCCTTCAGTGCCTCCTCCTCCTCAACCATCCAATGCCCCGCCAGCTGCTGGACCCTTTCAGCAGTTTCCGGCACCGCCCTTCCCCCCGACAATGCAGCCACGTGCACCTCCGCCGTCTATGGGACAACAATCAATTCAGTCTTCTGCACCTAATCTAGCACCGCCGTTTCCCACGTCTCTTCCACCAGCTCAGCCACAGATGCCTTTTGTCCCAATGGGATCTCCCCCACCTCAAAGTGCTCCTCCTCCTGCGCATATGGGTTCAAATGTTGCTCCGCGTACATTTCAGCCATCTTTTCCTGGGTACCCGAGTAAGCAGACTGGTCCTGAAATGCAAGGTCCACCCATGCATTCCTCTTTCCCTGCTAATCAAGGAAATTTTGGGACTGTTCCACCTGCTGGAGCTTCTCCTTTTTTGTCTCATCAAGGAGGTTATGTTCCATCACTCCAAGTGGCTCCTCCGCCTGGTATCCAGCCAATGCAGCAGCAACCTGGATCTGCGCCCCATATAGGTGCTGTTCAGGGCTTGGCAGAAGACTTCAATGCCCTCACAATGCAAACTCGTCCCGGAACAATGGATCCATTATTTGACCCCAAGGAACTTCCAAGGCCATTAGAAGGTGATATTGAGCCAAAGAATTTGGTTGACATGTATCCCATGAACTGCAATCCCCGGTTTCTACGACTCACGACTAGTGCCGTACCAAGCTCCCAGTCCTTGGCTTCTAGGTGGCACCTTCCACTTGGAGCAGTTGTTTCTCCGCTTGCTGAACCCCCTGATGGGGAAGAGGTGCCTATAGTTAATTTTGCCCCAGCTAGTGTTGTTCGCTGCAGAAGATGTCGCACATATGTGAATCCTTATATGACATTTACAGAAGCAGGAAGAAAGTTCCGTTGCAACGTTTGTACCTTGCTTAACGATGTTCCTAGTGAATATTATGCCCAACTAGATGCCACTGGAAAAAGAGTAGATATACATCAACGGCCTGAGCTTACAAAGGGGACTGTAGAATTTGTGGCCCCTGCTGAGTATATGGTGCGGCCTCCTATGCCACCAGTGTATTTCTTCCTCATCGATGTTTCCATATCTGCAGTTAGAAGTGGCATGATTGAGGTTGTGGCCAATACAATCAAGTCATGCTTGGATGAACTTCCCGGCTTTCCACGTACTCAAATTGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGTCTTCCCTGACTCAACCGCAGATGTTGGTAGTGTCAGATCTGGATGATATATTTATTCCGCTGCCAGATGATCTTCTTGTTAACTTGTCTGAATCAAGAAGTGTGGTAGAAACCTTCCTAGATACTTTGCCAACCATGTTCCATGACAATGTTAACTTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCATTTATGGTTATGAGTCAACTCGGAGGGAAATTGTTAATATTTCAAAATTCACTCCCATCTCTTGGTGTTGGCCGTTTGAAGTTACGTGGAGATGATTCTCGTGTTTACGGGACTGACAAAGAACATGGACTGAGACTGCCAGAAGATCCATTTTATAAACATATGGCTGCTGAGTTTTCCAAGTACCAAATCTCAGCAAATGTTTATGTATTCAGTGATAAGTACACAGATGTAGCCTCCTTGGTGATTTTTGTTGTTTTCATTGAAAATGTGTTGAATAACAATGTTGACATGCTTCTCTATGACTTCCACATTGTCACCCACAACAATCAAGGGACTGTTTCTGTTACCTACATTGATCAAGGGATTGTCATTGTCACCTACATCAATGGTAGTGATGGCAACAGTTCATTTTTCGGTAATGATGTGAAAGTCATTCGGGAAAATGACAACATTGTTATCCAACATGTTTTTGATGAAAACAATGAAAGAACTCTGGCAAAATATACTGCTGGGCAAGTGTATTTCTATCCAGCTTTCCAATCAGCTATTCATGGGGATAAATTGAGGCATGAATTAAGGAGAGACCTTACCAGAGAAACTGCATGGGAAGCTGTCATGCGTATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACTGATTTGTTAGCACTTCCTGCTGTAGATTGTGATAAAGCCTTTGCTATGCAGTTATCACTTGAAGAGACATTATTGACAACTCAGACAATGTATTTCCAAGTTGCATTGCTGTATCCTTACTTTGATAATTCTTGA 2484 0.4593 MGTENPGRPTFPSRPSPPPFPAAQTVTPFSSTGSVVGSEPPSFRPAPPAPSSQAASPFSSAGPAAAGPGAPGFRPAPPGRFNDPSVPPPPQPSNAPPAAGPFQQFPAPPFPPTMQPRAPPPSMGQQSIQSSAPNLAPPFPTSLPPAQPQMPFVPMGSPPPQSAPPPAHMGSNVAPRTFQPSFPGYPSKQTGPEMQGPPMHSSFPANQGNFGTVPPAGASPFLSHQGGYVPSLQVAPPPGIQPMQQQPGSAPHIGAVQGLAEDFNALTMQTRPGTMDPLFDPKELPRPLEGDIEPKNLVDMYPMNCNPRFLRLTTSAVPSSQSLASRWHLPLGAVVSPLAEPPDGEEVPIVNFAPASVVRCRRCRTYVNPYMTFTEAGRKFRCNVCTLLNDVPSEYYAQLDATGKRVDIHQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVANTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVETFLDTLPTMFHDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNSLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKHMAAEFSKYQISANVYVFSDKYTDVASLVIFVVFIENVLNNNVDMLLYDFHIVTHNNQGTVSVTYIDQGIVIVTYINGSDGNSSFFGNDVKVIRENDNIVIQHVFDENNERTLAKYTAGQVYFYPAFQSAIHGDKLRHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYPYFDNS 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01945 827 CDD Sec24-like 432 755 IPR041742 GO:0006886|GO:0006888|GO:0030127
Vimu6g01945 827 MobiDBLite consensus disorder prediction 70 119 - -
Vimu6g01945 827 Gene3D - 728 826 - -
Vimu6g01945 827 Gene3D - 305 357 - -
Vimu6g01945 827 PANTHER SEC24-RELATED PROTEIN 147 635 - -
Vimu6g01945 827 SUPERFAMILY beta-sandwich domain of Sec23/24 190 822 - -
Vimu6g01945 827 MobiDBLite consensus disorder prediction 10 24 - -
Vimu6g01945 827 Pfam Sec23/Sec24 zinc finger 358 395 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vimu6g01945 827 MobiDBLite consensus disorder prediction 174 196 - -
Vimu6g01945 827 Pfam Sec23/Sec24 trunk domain 432 636 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vimu6g01945 827 Pfam Sec23/Sec24 beta-sandwich domain 756 822 IPR012990 -
Vimu6g01945 827 SUPERFAMILY Zn-finger domain of Sec23/24 348 431 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vimu6g01945 827 MobiDBLite consensus disorder prediction 1 196 - -
Vimu6g01945 827 SUPERFAMILY vWA-like 432 635 IPR036465 -
Vimu6g01945 827 Gene3D von Willebrand factor, type A domain 434 639 IPR036465 -
Vimu6g01945 827 Gene3D - 358 415 - -
Vimu6g01945 827 MobiDBLite consensus disorder prediction 120 136 - -
Vimu6g01945 827 MobiDBLite consensus disorder prediction 137 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01945 Vimu-Chr6 17480348 17491113 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01945 K14007 - gmx:100791083 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01945 6 17480348 17491113 Vimu3g01989 3 34797508 34807413 PCT