Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01989 ATGGGGACAGAAAACCCTGGTCGATCATCCTTTCTTTCTAGACCACCCTTTGATGCAGCACAGGGTATGGCATCTTTTTCGTCAACTGCTACCATGGTTGAGTCAGAGCCTCCTTTTTTCAGACCCACTCCTCCTGCTCCTCCCTTGGCATCCACACCATTTTCATTATCTGCGCCACCAGGCCAGTTTAATGGCGCCTCAGTGCCTCCTCCTCCTTCCAATTCCCCACCTACTGCTGGACCTTTCCCGCGTTTTCCGATGACACAGTTCCCCTCAAATACTCAAGCACCTCCCCTGTTTCCTCCACCCATGGGACAACCAACATTTCAACCTTCTGCGGATCAAACTCAATCTTTTCCGGCTTCTCTTCCGCCTCAGCCGCACACTCCTTTTGTTTCAATGGGGTCTCCTCCTGCACTTCCAGGATCAACTGTTCCTCCTCCTGTGTTTCAGCCATCTTTTCCTGGATATCCGCAGAAACAGGCTGGCGCAGAAATGCAAGCTTCCCCTGTGCATTCCTCTAACCCTACAAGTCAAGGAAATTATGGGTCTGTCCCTGCACAACCTTTGCCTTTTCAACCTCATCAAGGAGTTTATGTTTCACAGCCCATGCAACAACCGGGATCTGGACAGCCTACAGTTGCCATTAATGGCTTGGCAGAAGACTTCAATTCGTTGTCAATTCAAACTCGTCCTGGACTCATGGAGCCGTCCATTGATGCTAAAGAATTGCCAAGGCCATTGGAAGGTGATGAGGAGCCAAAGTCTTTAGCTGATATGTATCCCATGAACTGCAATCCTAGATATCTACGACTAACGACCAGTGGAATGCCTGATTCCCAGTCCTTAATTTCAAGGTGGCATTTTCTTCTTGGAGCAGTTGTATGTCCGCTTGCAGAGCCTCCTGATGGGGAAGAGGTACCCATAGTTAATTTTGCTGCAACTGGTGTCGTACGCTGTAGGAGATGCCGCACGTATATAAATCCCTATGTCAAATTTACTGAAGGGGGAAGAAAGTTCCGGTGCAACGCCTGCTCCTTGCTTAATGACGATCTTTCTGAAGATGCTGATTTATTGGCCTTGTGTACAGTTCCTAGTGAATATTATGCACAACTAGATGCCACTGGCAGAAGAGTTGATTTGAATCAACGACCTGAGCTTACAAAGGGTACCGTAGAATTTGTTGCCCCAGCAGAATATATGGTGCGGCCTCCTATGCCTCCGGTATATTTCTTCCTCATTGATGTTTCCATATCTGCAGTTAGAAGCGGAATGATTGAGGTTGTGGCCCAAACAATCAGGTCATGTTTAGATGAGCTCCCTGGCTATCCACGAACACAAATAGGGTTTGCAACTTTTGACAGTACAATACATTTTTATAACATGAAGTCATCCTTGACTCAACCACAAATGTTGGTGGTCTCAGATCTGGATGACATATTTGTTCCCCTGCCAGATGATCTTCTTGTCAACTTATCAGAATCAAGAAGTGTGGTGGAAACTTTTCTTGACGGTCTACCATCCATGTTCCAGGACAATGTGAATCTGGAATCTGCTTTTGGTCCTTCTCTGAAGGCTGCCTTTTTGATTATGAGTCAACTTGGAGGGAAATTGTTAGTTTTTCAAAACACACTCCCATCTCTTGGTGTTGGTCGGTTGAAACTACGTGGAGATGATTCTAAAGTCTATGGCACAGATAAAGAACACGTGTTAAGACTGCCAGAAGATCCCTTTTACAAGCAAATGGCAGCTGAGTTTTCTAAATACCAAATCTCAATAAATATGTATGCATTCAGTGATAAGTACACCGACATCGCATCCCTAGGAACTCTGGCAAAGTATACTGCTGGTCAACTCTATTACTATCCAGCTTTCCAATCAGCCATTCACGGGGAGAAACTAAGAAATGAGCTAAGGAGAGACCTCACCAGAGAAACTGGCTGGGAAGCGGTATTGCGAGTTAGATGCGGTAAAGGTGTCCGTTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACAAATTTGTTAGCACTTCCAGCCGTGGATTGTGATAAAGCCTTTGCCATGCAGTTATCACTTGAAGAAATATCACTGACAGATCAGACAATGTATTTCCAAGTTGCATTGTTGTATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACATACAGCAGCAGCTCCAGTAGTTAAAGACTTGGTGGAGATGTATCGCTTGGCTGATACTGGTGCAATTTTATCTCTGTTTAGTAGGCTGGCAATTGAGAAAACATTATCCCATAAACTTGAAGATGCCCGGCGTGCTGTACATTTAGGAATAGTGAAAGGCCTCCGAGATTATCGAAATATCTATGCTGGGCAACAGCGGTTGGTGAATAGGATGATATATCCTGAGTCATTAAAGTTCCTACCCTTGTATGGTTTAGCTCTTTGTAGATCAGCACCTCTCCGTGGTGGATATGGGGATGTTTCACTAGATGAACGGTGTGCAGCTGGACACACAATGATGACCCTAACAGTAAAAAGGATGTTGAAACTTCTCTACCCTAGTTTGCATCGACTTGATGAATATCTTCTAAATGCTGATGATTTGAAAAGCATTAATAGAAGGTTACCTTTGACTAGGGAGAGCTTGGATTCTAGGGGCCTTTATATATATGACGATGGCTTCCAGTTCATTTTATGGTTTGGTAGAGTGATTTCACCTGACATAGCTAAGAACTTACTTGGGTCTAACTTTGCAGCTGAGTTATCAAAGGTTACTCTAAATGAGAATGAGAATGATACTGAAATGTCTCGGAGGCTGATAAAGGTACTTGAGAAGCTCAGAAGTACTGACCGTGCATATTACCAGTTGTGCCGCCTTGTGAGGCAAGGTGAACACCCCAGAGAAGGATTCCTTCTTCTTTCATACTTGTTTGAGGACCAGCTGGGTGCTAATAATGGATATGCTGATTGGATGATACAGATTTCCAGACAAGTGCAACAAACATAA 2997 0.4438 MGTENPGRSSFLSRPPFDAAQGMASFSSTATMVESEPPFFRPTPPAPPLASTPFSLSAPPGQFNGASVPPPPSNSPPTAGPFPRFPMTQFPSNTQAPPLFPPPMGQPTFQPSADQTQSFPASLPPQPHTPFVSMGSPPALPGSTVPPPVFQPSFPGYPQKQAGAEMQASPVHSSNPTSQGNYGSVPAQPLPFQPHQGVYVSQPMQQPGSGQPTVAINGLAEDFNSLSIQTRPGLMEPSIDAKELPRPLEGDEEPKSLADMYPMNCNPRYLRLTTSGMPDSQSLISRWHFLLGAVVCPLAEPPDGEEVPIVNFAATGVVRCRRCRTYINPYVKFTEGGRKFRCNACSLLNDDLSEDADLLALCTVPSEYYAQLDATGRRVDLNQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIRSCLDELPGYPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDGLPSMFQDNVNLESAFGPSLKAAFLIMSQLGGKLLVFQNTLPSLGVGRLKLRGDDSKVYGTDKEHVLRLPEDPFYKQMAAEFSKYQISINMYAFSDKYTDIASLGTLAKYTAGQLYYYPAFQSAIHGEKLRNELRRDLTRETGWEAVLRVRCGKGVRFTTYHGNFMLRSTNLLALPAVDCDKAFAMQLSLEEISLTDQTMYFQVALLYTASCGERRIRVHTAAAPVVKDLVEMYRLADTGAILSLFSRLAIEKTLSHKLEDARRAVHLGIVKGLRDYRNIYAGQQRLVNRMIYPESLKFLPLYGLALCRSAPLRGGYGDVSLDERCAAGHTMMTLTVKRMLKLLYPSLHRLDEYLLNADDLKSINRRLPLTRESLDSRGLYIYDDGFQFILWFGRVISPDIAKNLLGSNFAAELSKVTLNENENDTEMSRRLIKVLEKLRSTDRAYYQLCRLVRQGEHPREGFLLLSYLFEDQLGANNGYADWMIQISRQVQQT 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01989 998 Gene3D Sec23/Sec24 helical domain 731 995 - -
Vimu3g01989 998 Pfam Sec23/Sec24 beta-sandwich domain 647 730 IPR012990 -
Vimu3g01989 998 SUPERFAMILY beta-sandwich domain of Sec23/24 146 740 - -
Vimu3g01989 998 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 859 997 IPR036180 -
Vimu3g01989 998 PANTHER SEC24-RELATED PROTEIN 89 995 - -
Vimu3g01989 998 Gene3D - 263 389 - -
Vimu3g01989 998 SUPERFAMILY Zn-finger domain of Sec23/24 308 404 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vimu3g01989 998 Pfam Sec23/Sec24 trunk domain 405 641 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vimu3g01989 998 MobiDBLite consensus disorder prediction 64 84 - -
Vimu3g01989 998 MobiDBLite consensus disorder prediction 158 215 - -
Vimu3g01989 998 Gene3D von Willebrand factor, type A domain 407 644 IPR036465 -
Vimu3g01989 998 MobiDBLite consensus disorder prediction 229 259 - -
Vimu3g01989 998 FunFam protein transport protein Sec24D isoform X1 407 644 - -
Vimu3g01989 998 SUPERFAMILY vWA-like 405 645 IPR036465 -
Vimu3g01989 998 MobiDBLite consensus disorder prediction 242 256 - -
Vimu3g01989 998 CDD SP5_N 75 177 - -
Vimu3g01989 998 Pfam Sec23/Sec24 helical domain 742 845 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vimu3g01989 998 MobiDBLite consensus disorder prediction 1 125 - -
Vimu3g01989 998 MobiDBLite consensus disorder prediction 198 215 - -
Vimu3g01989 998 Gene3D - 265 730 - -
Vimu3g01989 998 SUPERFAMILY Helical domain of Sec23/24 742 849 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vimu3g01989 998 MobiDBLite consensus disorder prediction 38 54 - -
Vimu3g01989 998 MobiDBLite consensus disorder prediction 166 186 - -
Vimu3g01989 998 CDD Sec24-like 405 646 IPR041742 GO:0006886|GO:0006888|GO:0030127
Vimu3g01989 998 Gene3D Severin 850 976 IPR029006 -
Vimu3g01989 998 Pfam Sec23/Sec24 zinc finger 318 350 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01989 Vimu-Chr3 34797508 34807413 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01989 K14007 - gmx:100791083 1471.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01945 6 17480348 17491113 Vimu3g01989 3 34797508 34807413 PCT