Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01942 ATGGGTTCTGAAGGTCCAACAACACCCATAACAACAATTCATGTGACAGGATTTAAGAAATTCCATGGAGTTGCTGAGAATCCGACAGAAACAATTGTCAATAATTTGGCAGAGTACATGAATAAGAAGGGTTTGCCAAAGGGTTTAGTAATTGGGAGCTGCAGCATTCTTGAAACTGCTGGTCAAGGAGCACTTGTTTCACTGTACCAGAGATTGCAATCCGCTGTTATTTCCAAGGATTCTGAGTCTTCAAATTCCAATAGAACTATTTGGCTGCATTTTGGGGTTAACAGTGGTGCAACACGGTTTGCTATAGAGAACCAGGCAGTCAATGAGGCTAATTTTCGATGTCCGGATGAAATGGGTTGGAAGCCCCAGAAAGTCCCCATTGTTCCTTCGGATGGTGGAATTTCACGAACAAGGGAGACTTCACTCCCTGTAGTGGAGATCACCAAAGCCTTGGCAGAAAAGGGGTACGAAGTTATGGTATCAGATGATGCAGGCAGGTTCGTCTGCAATTACGTTTACTATCACTCCCTTCGCTTTGCCGAGCAGAATGGAATCAAATCTCTTTTCGTGCACGTGCCACTCTTCCTCACAATAAATGAAGAGACTCAAATGAAATTCGCTGCTTCCTTGTTAGAGGTTCTTGCCTCTAAATCTTAG 666 0.4369 MGSEGPTTPITTIHVTGFKKFHGVAENPTETIVNNLAEYMNKKGLPKGLVIGSCSILETAGQGALVSLYQRLQSAVISKDSESSNSNRTIWLHFGVNSGATRFAIENQAVNEANFRCPDEMGWKPQKVPIVPSDGGISRTRETSLPVVEITKALAEKGYEVMVSDDAGRFVCNYVYYHSLRFAEQNGIKSLFVHVPLFLTINEETQMKFAASLLEVLASKS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01942 221 PANTHER PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED 10 219 IPR016125 -
Vimu6g01942 221 PIRSF Pyrrolidone-crbxlat_pptds 10 221 IPR000816 GO:0005829|GO:0006508|GO:0016920
Vimu6g01942 221 Gene3D - 10 220 IPR036440 -
Vimu6g01942 221 SUPERFAMILY Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 12 218 IPR036440 -
Vimu6g01942 221 FunFam Pyrrolidone-carboxylate peptidase isoform A 10 220 - -
Vimu6g01942 221 CDD Peptidase_C15 12 219 IPR000816 GO:0005829|GO:0006508|GO:0016920
Vimu6g01942 221 Pfam Pyroglutamyl peptidase 13 198 IPR016125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01942 Vimu-Chr6 17458141 17460221 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01942 K01304 - gmx:100789152 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01942 6 17458141 17460221 Vimu6g01942 6 17458141 17460221 ECH
Vimu6g01942 6 17458141 17460221 Vimu3g01992 3 34830452 34832669 PCT