Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01992 ATGGGGTCTGAAGGTTCTCCAGCAGCTGTAACAACAACAGTTCATGTAACAGGTTTCAAGAAATTCCACGGGGTTTCAGAGAATCCAACGGAGACAATTGTGAATAATTTGATGGAGTATTTAAAGAAGAAGGGTTTGCCAAAAGGGTTAGTTATTGGGAGCTGCAACATTCTTGAGACTGCGGGTGAAAGAGTACTCGATCGCCTCAATAATACATTGCAGTCTGCCATTACTTCCAAGGAGTCTGAATCTCCAAGTTCCAACAGAATTATCTGGCTGCATTTTGGGGTTAATAGTGGTGCAACAAGGTTTGCTATAGAGCGACAAGCTGTCAATGAGGCTACATTCCGCTGCCCTGATGAAACGCAATGGAAGCCCCTGAAAGAGCCTGTTGTTTCTTCCGATGGTCCAATTACACGAATACGGAAGACTACCCTTCCCGTGGAGGAGTTAACCAAAATCCTGACAAGTAAGGGTTATAATGTAATGACATCCGATGATGCGGGCAGGTTTGTGTGCAACTATGTTTACTATCATTCCCTTCGCTTTTCGGAGCAGAACGGGATCAAATCCCTTTTTGTGCACGTGCCACTCTTCTCTACAATCAATGAAGAGACCCAAATGCAATTTGCTGCTTCCTTGCTAGAGGTACTTGCTTCATCATGCTAG 669 0.4439 MGSEGSPAAVTTTVHVTGFKKFHGVSENPTETIVNNLMEYLKKKGLPKGLVIGSCNILETAGERVLDRLNNTLQSAITSKESESPSSNRIIWLHFGVNSGATRFAIERQAVNEATFRCPDETQWKPLKEPVVSSDGPITRIRKTTLPVEELTKILTSKGYNVMTSDDAGRFVCNYVYYHSLRFSEQNGIKSLFVHVPLFSTINEETQMQFAASLLEVLASSC 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01992 222 CDD Peptidase_C15 13 220 IPR000816 GO:0005829|GO:0006508|GO:0016920
Vimu3g01992 222 PIRSF Pyrrolidone-crbxlat_pptds 11 222 IPR000816 GO:0005829|GO:0006508|GO:0016920
Vimu3g01992 222 FunFam Pyrrolidone-carboxylate peptidase isoform A 11 221 - -
Vimu3g01992 222 PANTHER PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED 9 220 IPR016125 -
Vimu3g01992 222 Gene3D - 10 221 IPR036440 -
Vimu3g01992 222 Pfam Pyroglutamyl peptidase 14 200 IPR016125 -
Vimu3g01992 222 SUPERFAMILY Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 12 219 IPR036440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01992 Vimu-Chr3 34830452 34832669 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01992 K01304 - gmx:100500630 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01992 3 34830452 34832669 Vimu3g01992 3 34830452 34832669 ECH
Vimu6g01942 6 17458141 17460221 Vimu3g01992 3 34830452 34832669 PCT