Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01933 ATGTTGCAGTGCATATTTCTTCTGTCCGATTCTGGAGAGGTAATGCTAGAGAAACAGCTTAGTGGGCACCGCGTAGATCGCTCAATATGTGCCTGGTTCTGGGACCAAGCCATTTCTCAACCTGGTTCTTTCAAGCAACAACCAGTTATTGCTTCCCCCACGCATTATCTATTCCAAGTTTTTCGCGAGGGAATCACTTTTTTGGCCTGCGCTCAAGTCGAAATGCCCCCATTGATGGCCACTGAGTTCCTTTGTAGGGTAGCTGATGTTCTCAGTGAATATCTTGGGGGATTGAATGAAGACTTGATCAAAGACAACTTTGTCATTGTGTACGAGCTTCTGGATGAGATGATAGACAATGGCTTCCCGCTAACTACAGAGCCTAATATCCTGCGAGAGATGATAGCCCCACCAAATATTGTTAGCAAAGTCTTGAGTGTTGTGACTGGCAGCAGCTCCAATGTGAGTGACACCCTCCCAGGTGCTACTGCATCTATTGTTCCCTGGAGAACAGCGGACACAAAGTATGCCAGCAATGAAATTTATGTAGATCTTGTAGAAGAAATGGATGCAACAATAAACAGGGACGGAGTTCTGGTGAAATGTGAGATCAACGGTGAGGTTCAAGTGAATTCCCATATCACTGGTCTTCCTGATTTGACTCTTTCGTTTTCAAATCCTTCAATCCTTGATGATGTGAGGTTCCATCCCTGTGTTAGATATCGGCCCTGGGAATCCCATCAATTTCTTTCATTCGTGCCTCCTGATGGGCAGTTTAAGCTCATGAGTTACAGAGTTAGAAAATTGAAGAACACCCCGATATATGTAAAGCCACAGTTGACTTCAGATGGTGGAACATGCCGTCTTAGTGTATTGGTTGGAATAAGAAATGATCCAGGAAAGACAATCGATTCCGTAACTGTTCAGTTTCAGCTTCCTTCTTGGATCTTATCAGCTGATCTGACTTCAAATTATGGAATAGTAAACATACTGTCTGACAAGACATGCTCTTGGTCCATTGGTAGGATCCCAAAGGATAAAGCTCCTTCAATGTCAGGAACATTGGTGCTGGAGACTGGATTGGAGCGCCTTCACGTCTTTCCCACATTTCAAGTGGGTTTTAGGATTATGGGTGTTGCCCTCTCTGGTCTGCAAATAGATAAACTGGATCTGAGGACTGTACCCTACCGCTTTTATAAAGGGTTTCGAGCTCTTACTCGAGCAGGAGAATTTGAAGTGAGGTCATAA 1248 0.4423 MLQCIFLLSDSGEVMLEKQLSGHRVDRSICAWFWDQAISQPGSFKQQPVIASPTHYLFQVFREGITFLACAQVEMPPLMATEFLCRVADVLSEYLGGLNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKVLSVVTGSSSNVSDTLPGATASIVPWRTADTKYASNEIYVDLVEEMDATINRDGVLVKCEINGEVQVNSHITGLPDLTLSFSNPSILDDVRFHPCVRYRPWESHQFLSFVPPDGQFKLMSYRVRKLKNTPIYVKPQLTSDGGTCRLSVLVGIRNDPGKTIDSVTVQFQLPSWILSADLTSNYGIVNILSDKTCSWSIGRIPKDKAPSMSGTLVLETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLRTVPYRFYKGFRALTRAGEFEVRS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01933 415 Gene3D Mu homology domain, subdomain B 272 413 - -
Vimu6g01933 415 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 167 414 IPR036168 -
Vimu6g01933 415 PRINTS Clathrin coat assembly protein signature 337 348 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu6g01933 415 PRINTS Clathrin coat assembly protein signature 230 257 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu6g01933 415 PRINTS Clathrin coat assembly protein signature 100 127 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu6g01933 415 CDD AP-3_Mu3_Cterm 167 414 - -
Vimu6g01933 415 Gene3D - 1 142 - -
Vimu6g01933 415 Gene3D Mu homology domain, subdomain B 167 410 - -
Vimu6g01933 415 CDD AP3_Mu_N 3 142 - -
Vimu6g01933 415 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 167 187 IPR018240 GO:0006886|GO:0016192|GO:0030131
Vimu6g01933 415 FunFam AP-2 complex subunit mu, putative 1 142 - -
Vimu6g01933 415 PANTHER AP COMPLEX SUBUNIT MU 1 414 - -
Vimu6g01933 415 SUPERFAMILY SNARE-like 1 142 IPR011012 -
Vimu6g01933 415 ProSiteProfiles Mu homology domain (MHD) profile. 178 414 IPR028565 -
Vimu6g01933 415 PIRSF AP_complex_mu 1 415 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu6g01933 415 Pfam Adaptor complexes medium subunit family 167 414 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01933 Vimu-Chr6 17402338 17405223 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01933 K12398 - gmx:100799191 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01933 6 17402338 17405223 Vimu6g01933 6 17402338 17405223 ECH
Vimu6g01933 6 17402338 17405223 Vimu3g01999 3 34859792 34872239 PCT