Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01999 ATGGGCATGCATAAAGGAGAAAAAGAGGGTACAGATAGAATATCCGTTAAGAGCTTAACTGCCACCGCCCCGAAACAACTTATATTTGAAATCTGTCTCAATGAAGGAGACAGTGAAGAAAGAAGGATCAGTGTTTCATCGTTGGAGAAGCATCTTGCTTTTTTGTTCCCAAGACTCTCTTTACTTGCAAGCTTCGTTCATTCTCTCTCATCTGTACACATGGATCCCAACCAGCCTGTGGGTGAAAACTACGCTAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGGCCGCAGCCTTGGCATTTTATATTCTCTCGGCCCTCTTTATCGATAACTTTGTCATCATTTTTGTGGTGACTGTCCTTCTTGCTGCCCTTGACTTTTGGGTAGTCAAGAATGTGAGTGGGCGAATTTTAGTTGGTTTGAGGTGGTGGAATGAAATCAATGATCTGGGTGAGAGTGTTTGGAAATTTGAGTGTCTTGACCAAGAGATACTTGCTTGCACCTTACATATTGATTTTTCCCCTGCAGTCATTGTCTCGGATGAACAAGAAAGATTCTTGGCTTTTCTGGTGGACCCTGTACCTTACGAATTACAGTCAAAATGTGGGCGTTGGCAGTTTTTGATAATGGGGGCTTTATGTAATAATATTGCTGATCAGATTCATTCACATGGTGCATGTTGCTTGGGGTCATTGCGTCTGAAAGGTGGTTCTGATGTGATGATGGGATGGCATGACCAACTTTCAAGAAGATGCCATACTGAGTCTATGGTGCGGCAGATTTTTGGTTGTGCTAAGGCTATTGCATGGATTTTTCTGGCAATATTCTCGCTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTTGGAGTTTGTCTGACCCTCAGCATTGCAAATATTATGCCAAGAAGCAGATACAACAATTTGCCTCTCAGACAATTGCCTCTCGGTTCTCATCAACCCTACAGTCAGCATTCAGTGTCGTCTGATTGTGAAAGATGGAAATACAAGTTGAATTGTGATGCGGTGGAAAGAACGACAGTGATGCTGCAGTGCATATTTCTCCTCTCAGATGCCGGAGAGGTAGTGCTAGAGAAACAGCTTTCGGGGCACTGCGTCGATCGCTCCATTTGTGCCTGGTTCTGGGAACAAGCCGTTTCGTTTGGCGACTCCTTCAAGCAACAACCAGTGATCACCTCTCATTCGCATTACATTTTCCAAGTTTTTCGCGATGGAATCACCTTTTTGGGGTGCACGCAAATTGAAATGCCACCCTTGATGGCCATTGAGAATATGAAGCCGAATGAATGCTACTCTGTTTACTTAATGATTTTTCCCTTAACTATGGTCGCTGATGTTCTCAATGATTATTTTGGGGCCTTAAACGAAGACATAATTAAAGACAACTTTGTCATTGTGTACGAGTTGTTGGATGAGATGATAGACAACGGCTTCCCCTTAACTACAGAACCTAGTATCCTGCGAGAGATTATTAATCCGCCAAATGTGGTTAACAAAGCTTTGAGTATTGTGACTGGTAGCAATTCAAATGTGAGTGATACCCTTCAGAGGGCTACTGCATCTTGTATTCCCTGGAGAACAGCAGAGCCAAAGTACTCCAACAATGAAGTATATGTTGACCTTGTTGAAGAAATGGATGCGATTATTAACAGGGATGGAGGTTTGTTGAAATGTGAGATCTATGGTGAAGTTCAAGTAAATTCCCGTATCTCAGGTTTTCCTGATTTGACCCTTTCATTTACAAATCCTTCCGTCCTAGATGATGTCAGGTTCCATCCGTGTGTTCGTTTTCGGCCTTGGGAGTCTCATCAAATTCTTTCTTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGGGTAAGAAAGTTGAAGAGCACTCCAATATATGTAAAGCCGCAGTTAATATCTGATGGTGGGACATGCCGTCTTAGTGTATTGGTTGGAATAAGAAATGATCCTGGAAAGACAATAGACTCGGTTACTGTTCAGTTTCAGCTCCCTCCTTTCATCTTGTCAGCTGATCTGACTTCAAATCATGGAACAGTGAACATCCTTGCTAAAAAGACATGCATATGGTCCATTGGTCGGATTCCAAAAGATAAAGCCCCTTCCATGTCTGGATTATTGGTGATTGAAACTGGTTTGGAGCGCCTTCATGTCTTCCCCTCATTTCAAGTGGGTTTTAGGATTATGGGTGTCGCCCTCTCTGGTCTGCAAATAGATAAACTGGATCTGAAGAATGCACCATACCCATTTTACAAAGGTTTTAGAGCTCTTACTCGGGCAGGTCAATTTGATGTAAGATCATAA 2343 0.4259 MGMHKGEKEGTDRISVKSLTATAPKQLIFEICLNEGDSEERRISVSSLEKHLAFLFPRLSLLASFVHSLSSVHMDPNQPVGENYANPRTCFFHVLFKAAALAFYILSALFIDNFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFECLDQEILACTLHIDFSPAVIVSDEQERFLAFLVDPVPYELQSKCGRWQFLIMGALCNNIADQIHSHGACCLGSLRLKGGSDVMMGWHDQLSRRCHTESMVRQIFGCAKAIAWIFLAIFSLIRLQADYLLVVGVCLTLSIANIMPRSRYNNLPLRQLPLGSHQPYSQHSVSSDCERWKYKLNCDAVERTTVMLQCIFLLSDAGEVVLEKQLSGHCVDRSICAWFWEQAVSFGDSFKQQPVITSHSHYIFQVFRDGITFLGCTQIEMPPLMAIENMKPNECYSVYLMIFPLTMVADVLNDYFGALNEDIIKDNFVIVYELLDEMIDNGFPLTTEPSILREIINPPNVVNKALSIVTGSNSNVSDTLQRATASCIPWRTAEPKYSNNEVYVDLVEEMDAIINRDGGLLKCEIYGEVQVNSRISGFPDLTLSFTNPSVLDDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLISDGGTCRLSVLVGIRNDPGKTIDSVTVQFQLPPFILSADLTSNHGTVNILAKKTCIWSIGRIPKDKAPSMSGLLVIETGLERLHVFPSFQVGFRIMGVALSGLQIDKLDLKNAPYPFYKGFRALTRAGQFDVRS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01999 780 ProSiteProfiles Mu homology domain (MHD) profile. 543 779 IPR028565 -
Vimu3g01999 780 Gene3D - 351 507 - -
Vimu3g01999 780 Gene3D Mu homology domain, subdomain B 637 777 - -
Vimu3g01999 780 Pfam Adaptor complexes medium subunit family 532 779 IPR028565 -
Vimu3g01999 780 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 532 779 IPR036168 -
Vimu3g01999 780 CDD AP3_Mu_N 353 507 - -
Vimu3g01999 780 Gene3D Mu homology domain, subdomain B 532 775 - -
Vimu3g01999 780 PANTHER AP COMPLEX SUBUNIT MU 351 779 - -
Vimu3g01999 780 Pfam Eukaryotic protein of unknown function (DUF846) 86 164 IPR008564 GO:0016020
Vimu3g01999 780 PRINTS Clathrin coat assembly protein signature 465 492 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu3g01999 780 PRINTS Clathrin coat assembly protein signature 595 622 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu3g01999 780 PRINTS Clathrin coat assembly protein signature 702 713 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu3g01999 780 SUPERFAMILY SNARE-like 351 508 IPR011012 -
Vimu3g01999 780 CDD AP-3_Mu3_Cterm 532 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01999 Vimu-Chr3 34859792 34872239 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01999 K12398 - gmx:100782926 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01999 3 34859792 34872239 Vimu3g01999 3 34859792 34872239 ECH
Vimu6g01933 6 17402338 17405223 Vimu3g01999 3 34859792 34872239 PCT