Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01930 ATGATCACGATCAACCTTGTTTGCAACTGCACCATGAAACCATCCCCTAAGATCCTAATTGGTCACAAGAATTCATCGTTTCTTGCAAGATGCCACCATACTCTGATCATGTCTATGTCCAATAACTCCACCGCTTGTGGCCTCAATCTTCATCTCAACACCATGCAGTGCCCTTTTCACGTGCGGGAATTTGGACGCACAATGCATGGAAGTCAACAAGCTTTCGGGCTGCTCTCTTCGAGTTTTGGCCAATCAAGTTCCATCGGTTTAAGCGCAACAAGAACCACAAAACGGGGTGTGTCTGCCATTGCCGGGATAGACTTCAAATTCAAGTCTCGTGACTTCTCGAGCTCCGTGGAGACATGTGAGAACATTAATGGTAAAATGGTTTACCTAAAGGATGGCATGAATGTGAAGCCAACAGCGGAGGAAAGGGTTGACAATGACGAGGATAGTGTTGGAGGAGAGAAAGTGTCTGGTTTAAAAGCTGATGAGAAAAATAACAAGAGTGAGAATGAAAAAGAGGGTGAGAAGGTAGAGGAGGAGGAGACAGAAGTGGAGAAAGAGGCATGGAGTTTATTGCAAGAGGCACTCGTGACATACTGTGATAAACCTGTGGGGACGGTGGCAGCGAATGATTCGGATGATCAACAACCTTTGAATTATGATCAGGTTTTTATAAGGGATTTTATCCCTTCGGCTCTTGCTTTCTTGCTCAAGGGAGAAAAGGAGATTGTCAAGAACTTTCTCCTTTACACCTTGCAACTCCAGAGTTGGGAGAAAACAGTGGACTGCCATAGCCCAGGGCAGGGCCTGATGCCTGCTAGTTTCAAAGTTAAAACTATGAAAGTTGACGGAAAAAGTGAAGAAGTTTTAGATCCTGATTTTGGGGAATCAGCTATAGGTCGTGTTGCTCCTGTAGATTCAGGATTGTGGTGGATCATCCTGCTGCAGGCTTATGGGAAGATTACTGGGGACTGCAGCTTACAAGAAAGGTTGGATGTTCAAACAGGCCTAAAAATGATCCTTAATCTGTGCTTAACGGATGGCTTTGATATGTTTCCTTCTCTGTTAGTAACTGATGGATCTTGCATGATAGACAGGAGGATGGGTATTCATGGCCACCCCCTTGAGATTCAGGCCTTGTTTTACTCAGCTCTTCGCTCGGCCCGTGATATGGTTGCTTCAGATGAAAATTCCAAGAATCTGGTTGGAGAAATTAACAACAGACTCAGTGCACTATCATTTCACATTAGGGAATACTATTGGTTGGATGTGCAAAAGATGAATGAGATATACAGGTACAAAACAGAAGAGTACTCATTGGATGCCACAAACAAGTTCAACATCTATCCAGATCAAATCCCTTTGTGGCTAATTGATTGGGTTCCAAACAACGGAGGATATCTTTTAGGGAATCTGCAGCCAGCTCATATGGATTTCAGGTTTTTCATGCTTGGAAATCTTTGGTCAATCGTTTCCTCTTTGGGCACCCCAGGACAGAATGATGCTATTTTGAATCTGATAGAAGCAAATTGGAAGGATCTAGTGGGGGAAATGCCTCTTAAGATATGTTATCCTGCCTTGGAGCATCATGAATGGCGAATAATTACAGGCTCTGACCCTAAGAATACCCCTTGGTCATATCATAATGGTGGGTCCTGGCCAACCCTTCTGTGGCAGTTCACACTTGCATGCATGAAAATGAATAGAACTGAACTGGCAGAAAAAGCAGTTGCTTTGGCTGAGAAAAGGCTGCCCCGTGATTCTTGGCCAGAATATTATGACACACCCAATGCAAGATTTATTGGCAAACAAGCCCGGCTTTATCAAACTTGGACTTTAGCTGGTTTCCTTGCATCTAAGATGCTTCTGAAGAATCCTAATTTGGCTTCCTTGTTATGGTGGGATGAGGATTTTGAGATCCTTGAGAATTGTATTTGTTTGCTTCACAAGAGTGGCAGAGTCAAATCCTCTCGTGTCCCTGACAAATCTCAGATTCTCGTTTGA 2010 0.4373 MITINLVCNCTMKPSPKILIGHKNSSFLARCHHTLIMSMSNNSTACGLNLHLNTMQCPFHVREFGRTMHGSQQAFGLLSSSFGQSSSIGLSATRTTKRGVSAIAGIDFKFKSRDFSSSVETCENINGKMVYLKDGMNVKPTAEERVDNDEDSVGGEKVSGLKADEKNNKSENEKEGEKVEEEETEVEKEAWSLLQEALVTYCDKPVGTVAANDSDDQQPLNYDQVFIRDFIPSALAFLLKGEKEIVKNFLLYTLQLQSWEKTVDCHSPGQGLMPASFKVKTMKVDGKSEEVLDPDFGESAIGRVAPVDSGLWWIILLQAYGKITGDCSLQERLDVQTGLKMILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRSARDMVASDENSKNLVGEINNRLSALSFHIREYYWLDVQKMNEIYRYKTEEYSLDATNKFNIYPDQIPLWLIDWVPNNGGYLLGNLQPAHMDFRFFMLGNLWSIVSSLGTPGQNDAILNLIEANWKDLVGEMPLKICYPALEHHEWRIITGSDPKNTPWSYHNGGSWPTLLWQFTLACMKMNRTELAEKAVALAEKRLPRDSWPEYYDTPNARFIGKQARLYQTWTLAGFLASKMLLKNPNLASLLWWDEDFEILENCICLLHKSGRVKSSRVPDKSQILV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01930 669 MobiDBLite consensus disorder prediction 142 184 - -
Vimu6g01930 669 Pfam Alkaline and neutral invertase 190 628 IPR024746 GO:0033926
Vimu6g01930 669 FunFam probable alkaline/neutral invertase B 216 621 - -
Vimu6g01930 669 Gene3D - 217 619 IPR012341 GO:0005975
Vimu6g01930 669 Coils Coil 162 189 - -
Vimu6g01930 669 MobiDBLite consensus disorder prediction 142 176 - -
Vimu6g01930 669 SUPERFAMILY Six-hairpin glycosidases 190 620 IPR008928 GO:0005975
Vimu6g01930 669 PANTHER - 126 651 IPR024746 GO:0033926
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01930 Vimu-Chr6 17387338 17390796 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01930 - - gmx:100812691 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01930 6 17387338 17390796 Vimu3g02001 3 34886377 34890255 ECH
Vimu6g01930 6 17387338 17390796 Vimu6g01930 6 17387338 17390796 ECH
Vimu6g01930 6 17387338 17390796 Vimu3g02001 3 34886377 34890255 PCT