Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02001 ATGAACGCAATTGCCCTTATTCGCAACCGGGCCATGAAATCCATTCGCACGATTCTCATCAGTTCCCGGAACTCATCGCCTTTTCTGTCCACACCTGCAAATTCAGGTCATGCTCCTCCTATTGCTAGCAATTCCCCGAGACCCCGTTTCAATCATCACCAGCCTTTGCAAATGTATCGCATAAAGGGTATTGCGCAGAAAGTTTTTGGCTTGCCTTATTCGAATTTCGCCCCTTTAACAATGCCCTTTATTTTAATCACGTCCAACAGGGACGTATCTACCTTCAAGGTTCGAAATTGCTCAACCTCCGTGGAGAGCCGTGGCCATGACAACAATTTTGAGAGGATTTACGTACAGGGTGGCATGAATAACGTGAAGCCCTTGGTGGTGGAAAGTTCTCACGAGGATGTTACAGACGAGAGAAATTTAGGTGGTGAAGTGAATGTGAGTGTGGGGAAGAGTAAATGGGAGGTGTCAGATGTGGAAAAACAAGCATGGAAGTTGTTACAGGGAGCCGTTGTGACTTATTGTGGCAACCCTGTGGGAACTGTGGCGGCAAATGATCCTGGTGACAAGCTACCCTTGAATTATGATCAGGTCTTTCTCAGGGATTTTATCCCATCAGCACTTGCTTTCTTGCTTAGAGGAGAAAGTGAGATTGTCAAGAACTTTCTTCTTCACACCTTGCAGTTGCAGAGTTGGGAGAAAACAGTGGACTGCTACAGTCCAGGGCAGGGCCTGATGCCTGCAAGTTTCAAAGTTAGAACTGTAGCTCTGGACGAAGATAAACGTGAAGAAGTTTTGGATCCTGATTTCGGGGAATCAGCTATTGGTCGCGTTGCACCTGTAGATTCAGGATTGTGGTGGATCATCCTCTTGCGGGCCTATGGGAAGCTCACAGGAGATTGCAGCTTGCAAGAAAGGGCTGATGTTCAAACAGGCTTAAAAATGATCCTTAACTTGTGTTTAACAGATGGTTTCGATATGTTTCCTTCGCTGCTAGTCACTGATGGTTCTTGCATGATAGACAGGAGGATGGGGATTCATGGTCACCCCCTTGAGATCCAAGCATTATTTTACTCAGCTCTTCGCTGCTCACGTGAGATGCTTGTTGTAACTGAGGGAACTGATAATCTTATTAGAGCTATTAACAACCGGCTCAGCGCTTTGTCATTCCACATTAGAGAATACTATTGGGTGGACATGAAAAAGATGAATGAAATATACAGGTATAAAACAGAAGAGTACTCCATGGATGCCATCAATAAATTCAACATCTATCCAGAACAAATTCCACCGTGGTTAATGGATTGGATTCCAGAAGAAGGTGGATATCTGATTGGGAATTTGCAGCCAGCTCACATGGACTTCAGGTTTTTCACACTTGGAAATCTTTGGTCCATCGTATCGTCATTGGGCACCCCAAGACAGAACCAGGCTACATTAAATCTGATAGAAGCAAAATGGGATGATCTTGTGGGCCATATGCCTCTTAAGATATGTTATCCTGCCTTGGATAATGAAGAGTGGCGCATAACTACTGGCTCTGACCCAAAGAATACCCCTTGGTCATATCACAATGGTGGATCTTGGCCAACCCTTCTGTGGCAGTTCACGCTGGCATGCATCAAAATGGGGAGGACTGAACTTGCCCAGAAAGCAGTTGCTTTGGCTGAGAAAAGACTGCCAGTTGATTCTTGGCCTGAATACTATGATACACGCACTGGAAAGTTTATCGGAAAACAAGCCCGGATGTATCAAACATGGACCATAGCTGGTTTCCTTACATCCAAGATGCTTTTGAAAGATCCTGAGACGGCATCCAGGTTATTTTGGGAGGAGGATTATGAGCTTCTAGACATATGTGTTTGTGGACTTAGCAAGAATGGCAGGAAAAGGTGTTCCCGTGGTGCTGCCAGGTCTCAGATTCTTGTATGA 1938 0.452 MNAIALIRNRAMKSIRTILISSRNSSPFLSTPANSGHAPPIASNSPRPRFNHHQPLQMYRIKGIAQKVFGLPYSNFAPLTMPFILITSNRDVSTFKVRNCSTSVESRGHDNNFERIYVQGGMNNVKPLVVESSHEDVTDERNLGGEVNVSVGKSKWEVSDVEKQAWKLLQGAVVTYCGNPVGTVAANDPGDKLPLNYDQVFLRDFIPSALAFLLRGESEIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVALDEDKREEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKLTGDCSLQERADVQTGLKMILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCSREMLVVTEGTDNLIRAINNRLSALSFHIREYYWVDMKKMNEIYRYKTEEYSMDAINKFNIYPEQIPPWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPRQNQATLNLIEAKWDDLVGHMPLKICYPALDNEEWRITTGSDPKNTPWSYHNGGSWPTLLWQFTLACIKMGRTELAQKAVALAEKRLPVDSWPEYYDTRTGKFIGKQARMYQTWTIAGFLTSKMLLKDPETASRLFWEEDYELLDICVCGLSKNGRKRCSRGAARSQILV 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02001 645 FunFam probable alkaline/neutral invertase B 191 597 - -
Vimu3g02001 645 PANTHER - 125 628 IPR024746 GO:0033926
Vimu3g02001 645 MobiDBLite consensus disorder prediction 28 50 - -
Vimu3g02001 645 Gene3D - 196 595 IPR012341 GO:0005975
Vimu3g02001 645 SUPERFAMILY Six-hairpin glycosidases 163 596 IPR008928 GO:0005975
Vimu3g02001 645 Pfam Alkaline and neutral invertase 165 604 IPR024746 GO:0033926
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02001 Vimu-Chr3 34886377 34890255 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02001 - - gmx:100785091 1158.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02001 3 34886377 34890255 Vimu3g02001 3 34886377 34890255 ECH
Vimu6g01930 6 17387338 17390796 Vimu3g02001 3 34886377 34890255 ECH
Vimu6g01930 6 17387338 17390796 Vimu3g02001 3 34886377 34890255 PCT