Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01924 ATGAGTTCTTCGGCACCTCAAGTTTCCAACAACAAAACAATGTGGCTGCATCCAAAGGTTTTGGGTTTCAATCCTTCTGAAAGATGGGGGCACTCTGCTTGCTTCTCCAAGGGCCTTATGTATGTCTTTGGGGGTTGCTGTGGGGGGCTGCATTTTTGCGATGTTCTCACTCTGGACCTTACCAAAATGGTTTGGAGCAAGCTTACTACTACCGGTGAGAAGCCGGGGCCGAGAGATAGTCACAGTGCTGTTCTTGTGGGGCATAAAATGATAGTGTTTGGTGGCACGAATGGGTTCAAGAAGGTGAATTACATTCACATACTTGATCTTGTTACCAAAGAGTGGTTTCGACCTGAATGTAAAGGGACTCCTCCTTCTCCACGTGAAAGCCATACTGCCACGCTGGTTGGTGATGAAAGGATAGTGATATTTGGCGGTAGTGGAGAAGGTCATGCTAACTATTTAAATGATTTGCACATTCTTGATCTTCGAACCATGAGTTGGACTTCCCCTGAGTTGAAAGGTGATTTGCCGGTCCCCAGAGATAGTCATAGTACCCTTGCAATCGGGAACAAACTTATTGTGTATGGTGGAGATTCTGGTGATCAGTATCATGGCAATGTTCATATGCTTGATATGGCTACAATGACTTGGTCTAGATTGACGATTCAAGGTTCTCCACCAGGAGTCAGGGCAGGTCATGCTGCAGTTAACATCGGAACAAAGGCAAGTTTTTTATATTCATTATTGCTAGGACTTGCTTGTTACCTAAGGGTATATATCATTGGAGGAGTTGGAGATAAACGTTACTATAACGACGTTTGGATCTTTGATATTTGCAATTTTTTGTGGACTCAACTCGATATACATTTTCAACAGCCACAAGGGCGATTTTCTCATACAGCTGTTGCTGCAGGCATGGATATTGCAATATATGGCGGATGTGGGGAAGATGAACGTCCTCTCAATGAATTGTTAGTGTTGCAGCTTGCAGCAGAGCATCCAAATGGACGTTACTACGTTCCCATGAGCAAACCTATTGGAACTTATTGGAATCACGAAAAGAATATTATCCCGGCAGAAGCGGATACTAACTCGGAAACTATCCTCGTGAGGAATGACGTGGAAGCTTTTGGAAACGGAGCTTATGAAATTGCATCAGAAAAATCGTCGCCTTATCACTTTGATTCAGGTTCTTCACGACAGAAGAGGAGGAGAATTGCTGCTGCAAAGGTATGGGATGTTGAATCAGAACAAGAAGATAGTTTTCTTTCATTGTCTCTTCATTCATCTCCATATAAATCGGATCAAGAACAGATCCCAAGTCAAGAAGCAAATGCATTCTTTCCAACCACTTCCCAACACGAAAATGACTCAAATTATAAGAGAACATTGATGAATGTCCCACTTAAGACTCCAAAGGCTCTTCATTTCCTACAACATCAATTAAAACAAGAACAATGTCTTCATGTTAACGAGGACAGAAAAAGAGCTCAACTTCAGGCTGCAGAGCAGAAACCAATGCTGCGACCCATTCAACACCTGATTGGTGGTGAAGTTCGGGAGAGAGTTGAAGGACCCTTTGACCCAGTTTCGGTATCTCCTACAGTTGTGAATGAAAGGATTTTCCGGGGAGTCATATTTGCACCTGGAGCAGGAGTTGTCTCAAAGGGGGCCAGTGTTAAACCGAATTGTCCTTCCTCTCAAGCCTTTTTGGGTACTTTAAGGGCTTCCCAGGAAGCACCAATTTGTTTGCATGTAGAGCCATACCATGTTTCACGATCAAGGCAAACCCCAGTGGCTTTACCATTTCCAATCATGGGAGCGACTTCTAGTGTTGTTTCCAAGGAGCATAAAATCAGGAGTGATCTTCAAGGATTGGCTCTAACACTTGGAGGACCAGCCAGTGGAAATCCTCAGGTAAAATATTGA 1932 0.4358 MSSSAPQVSNNKTMWLHPKVLGFNPSERWGHSACFSKGLMYVFGGCCGGLHFCDVLTLDLTKMVWSKLTTTGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNYIHILDLVTKEWFRPECKGTPPSPRESHTATLVGDERIVIFGGSGEGHANYLNDLHILDLRTMSWTSPELKGDLPVPRDSHSTLAIGNKLIVYGGDSGDQYHGNVHMLDMATMTWSRLTIQGSPPGVRAGHAAVNIGTKASFLYSLLLGLACYLRVYIIGGVGDKRYYNDVWIFDICNFLWTQLDIHFQQPQGRFSHTAVAAGMDIAIYGGCGEDERPLNELLVLQLAAEHPNGRYYVPMSKPIGTYWNHEKNIIPAEADTNSETILVRNDVEAFGNGAYEIASEKSSPYHFDSGSSRQKRRRIAAAKVWDVESEQEDSFLSLSLHSSPYKSDQEQIPSQEANAFFPTTSQHENDSNYKRTLMNVPLKTPKALHFLQHQLKQEQCLHVNEDRKRAQLQAAEQKPMLRPIQHLIGGEVRERVEGPFDPVSVSPTVVNERIFRGVIFAPGAGVVSKGASVKPNCPSSQAFLGTLRASQEAPICLHVEPYHVSRSRQTPVALPFPIMGATSSVVSKEHKIRSDLQGLALTLGGPASGNPQVKY 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01924 643 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 14 461 - -
Vimu6g01924 643 Gene3D - 254 344 IPR015915 GO:0005515
Vimu6g01924 643 Pfam Galactose oxidase, central domain 87 135 - -
Vimu6g01924 643 Pfam Galactose oxidase, central domain 190 237 - -
Vimu6g01924 643 Pfam Galactose oxidase, central domain 39 85 - -
Vimu6g01924 643 Pfam Galactose oxidase, central domain 139 189 - -
Vimu6g01924 643 SUPERFAMILY Kelch motif 259 328 IPR015915 GO:0005515
Vimu6g01924 643 Gene3D - 8 249 IPR015915 GO:0005515
Vimu6g01924 643 SUPERFAMILY Kelch motif 20 242 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01924 Vimu-Chr6 17329846 17334592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01924 168 330 Acyl Lipid Metabolism Gene Families AT3G05420 28.144 1.61e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01924 K20285 - gmx:100814299 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01924 6 17329846 17334592 Vimu6g01924 6 17329846 17334592 ECH
Vimu6g01924 6 17329846 17334592 Vimu3g02014 3 35019692 35023422 PCT