Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02014 ATGGAGTCTTTGGTTGCTGAAACAGCCAAGAAGAAAGCAATGTGGTTGTATCCAAAGGTTTTGGGTTATAATCCTTCTGAAAGATGGGGGCACTCTGCTTGTTTCTCTGGGGGGCTTATGTATGTCTTTGGGGTACGAGCAGTAAAATCCCTTTTCCTAGTATTAACTTCTGAGTTGTTCATGATGCTTGTTGCTGGGTTGGCCTCATTTATGGGCTGTTGTGGAGGGCTGCATTTCGGAGATGTTCTGTGTTTGGACCTTGTGAAAATGAATTGGAGCAAGCTTGGGACCACGGGTGAAAAGCCAGGTCCTAGAGATAGCCATGGTGCTGTTCTTGTAGGGCATAAAATGATAGTTTTCGGTGGCACCAATGGGTTAAAGAAGGTGAATGACACTCATATATTGGACCTTGTTACCAAAGAGTGGATTCGTCCTAAATGTGAAGGGACTCCTCCTTCACCAAGGGAAAGTCACACTGCTACACTAGTTGGTGATGAAAGAGTAGTGATTTTTGGTGGCAGTGGTGAAGGTGACGGAAACTATTTAAATGATTTGCATGTTCTAGACCTTCGAACCATGAGGTGGACTTCTCCTCAGGTAAAAGGCGATTTGCCTGTCCCTAGGGACAGTCACAGCACTCTTGCAATCGGGAACAGACTTTTTGTTTATGGTGGAGACTGTGGTGATCAGTATCAGGGCGATGTTAATGTGCTTGACATGGACACAATGACTTGGTCAAGGTTGAAAATTCAAGGATCTTCTCCAGGAGTCAGGGCAGGTCATGCTGCTGTCTACATCATTGGAGGGGTGGGAGATAAACGTTATTACAACGACATATGGGTGTTTGACATCTGCACCTGTTCCTGGGGTCAGCTTGATTTTCGTGGTCAACCGCCACAGGGGCGATTTTCTCACACAGCTGTTGTGGCAGACATGGATATTGCCATATATGGCGGTGAGATTTTCTTTCTGATATCTCACAGGTGTGGGGAAGACGAACGTCCTTTGAACGAGTTGCTAGTGTTGCAGCTTGGAGCAGAGCATCCAAATGGACGTTACAACATTTCCATGTGCAAAGTTTTTGGAACTTATTGGAATCAAGAAAAGAGGATCATGCCTAGAGGAGCTGATACCAACTCGACAACTCCATGGCCGGAGAACCATATGGAAGCCATAGGAAAATGGGCTAATGAAGTTGCGTTGGATAGAGTACAACCTTGTAACATCGATTCAGGCAGTTCACAACACAAGAGGAAGAGAATCGGTGTGGCAAAGGTGTGGGATGTTGAATCAGAACAAGAAGAACATTCTCTTTCACTGTCCCAGCATTCATCTCCTTCTCAATCTGATCAAGAACAGACCCCAGCTCAAAAAGCAAATGTTTCCATCATGGATTCTCAGAGGTATCAATGGTTCAAACAGATGAATAAAAGTCCAAGCTATTACCAGCTCGACAATGACTCAAGTAACACCACATTTTTTAAGAATCTCACACAAAGAAGTGTCCATCCCATGAAACATCAACCTAAACAAGAGCAGTATGTTCACATTGATGATGATAGAAAAGTACCTCGACACACTCAACACCTGATCGGTGCTGAAGTTCGGGGAAAAGTTGATGGAGCCTTTGATTCAGGTTTACTCATGACTGCAGTAGTTAATGGAAGAGTTTTCAGAGGAGTGTTATTTGCACCAGATTTGCAGCAAGTAACAGAGCCCTGCCATGGCTTCAGGCAACCTGTGGTAGCTCAAGCATCATCAGCAATGATGAGAGGCCCAACTTCTGCATCTTTAGCCAAAGAGCATGAAATGAGGAGTGACCTTCAAGGCTTGGTTTTGACTCTTGGAGGGCCTGCAAGTGCTAACCATGCTTCATCCTAG 1881 0.4487 MESLVAETAKKKAMWLYPKVLGYNPSERWGHSACFSGGLMYVFGVRAVKSLFLVLTSELFMMLVAGLASFMGCCGGLHFGDVLCLDLVKMNWSKLGTTGEKPGPRDSHGAVLVGHKMIVFGGTNGLKKVNDTHILDLVTKEWIRPKCEGTPPSPRESHTATLVGDERVVIFGGSGEGDGNYLNDLHVLDLRTMRWTSPQVKGDLPVPRDSHSTLAIGNRLFVYGGDCGDQYQGDVNVLDMDTMTWSRLKIQGSSPGVRAGHAAVYIIGGVGDKRYYNDIWVFDICTCSWGQLDFRGQPPQGRFSHTAVVADMDIAIYGGEIFFLISHRCGEDERPLNELLVLQLGAEHPNGRYNISMCKVFGTYWNQEKRIMPRGADTNSTTPWPENHMEAIGKWANEVALDRVQPCNIDSGSSQHKRKRIGVAKVWDVESEQEEHSLSLSQHSSPSQSDQEQTPAQKANVSIMDSQRYQWFKQMNKSPSYYQLDNDSSNTTFFKNLTQRSVHPMKHQPKQEQYVHIDDDRKVPRHTQHLIGAEVRGKVDGAFDSGLLMTAVVNGRVFRGVLFAPDLQQVTEPCHGFRQPVVAQASSAMMRGPTSASLAKEHEMRSDLQGLVLTLGGPASANHASS 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02014 626 Gene3D - 148 388 IPR015915 GO:0005515
Vimu3g02014 626 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 14 588 - -
Vimu3g02014 626 Pfam Kelch motif 104 143 IPR006652 GO:0005515
Vimu3g02014 626 MobiDBLite consensus disorder prediction 432 458 - -
Vimu3g02014 626 SUPERFAMILY Kelch motif 69 326 IPR015915 GO:0005515
Vimu3g02014 626 Gene3D - 14 147 IPR015915 GO:0005515
Vimu3g02014 626 MobiDBLite consensus disorder prediction 438 458 - -
Vimu3g02014 626 Pfam Galactose oxidase, central domain 217 266 - -
Vimu3g02014 626 Pfam Galactose oxidase, central domain 166 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02014 Vimu-Chr3 35019692 35023422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02014 194 320 Acyl Lipid Metabolism Gene Families AT3G05420 29.861 1.17e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02014 K20285 - gmx:100787222 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02014 3 35019692 35023422 Vimu3g02014 3 35019692 35023422 ECH
Vimu6g01924 6 17329846 17334592 Vimu3g02014 3 35019692 35023422 PCT