Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01918 ATGTTTTTGGTCGATTGGTTTTATGGGATTCTAGCGTCGCTTGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCCTGGGTCTCGATAACGCTGGCAAAACCACCCTGCTTCACATGCTCAAAGACGAGAGACTAGTCCAGCATCAGCCCACCCAGTATCCTACGTCAGAGGAGTTGAGTATTGGAAAGATCAAGTTCAAAGCTTTTGATCTAGGGGGTCATCAGATTGCTCGAAGAGTGTGGAAAGATTACTATGCCCAGAGCCAAACAGCACTGTGGGATTCATGCAGGCTATCTCACATAATAAATGGTATAAGACTTTTGTTAACATGGCTAGACATGCTAATATGTGTTGATAGTAGTTGCAGGAATAGAGCTGCACGAGTGGCAGAAATGACGGTAGATGCAGTGGTGTACTTGGTTGATGCGTATGACAAGGAAAGATTTGCTGAGTCAAAAAAAGAGCTGGATGCTCTACTCTCTGATGAATCTTTAGCCAATGTCCCTTTCCTTGTCCTTGGGAACAAAATTGATATTCCATATGCTGCCTCAGAAGAAGAGCTGCGTTACCATTTGGGCCTGACTAACTTCACCACAGGCAAAGGTAAGGTAAACTTGGCCGACTCAAATGTCCGTGCCATGGAGGTGTTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGGGAAGGTTTCAAATGGCTTTCTCAGTACATCAAATAG 720 0.4472 MFLVDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQSQTALWDSCRLSHIINGIRLLLTWLDMLICVDSSCRNRAARVAEMTVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLADSNVRAMEVFMCSIVKKMGYGEGFKWLSQYIK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01918 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 238 IPR027417 -
Vimu6g01918 239 ProSiteProfiles small GTPase Arf family profile. 14 238 - -
Vimu6g01918 239 SMART arf_sub_2 4 239 - -
Vimu6g01918 239 Gene3D - 1 239 IPR027417 -
Vimu6g01918 239 Pfam ADP-ribosylation factor family 8 93 IPR006689 GO:0003924|GO:0005525
Vimu6g01918 239 Pfam ADP-ribosylation factor family 133 238 IPR006689 GO:0003924|GO:0005525
Vimu6g01918 239 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Vimu6g01918 239 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Vimu6g01918 239 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Vimu6g01918 239 PANTHER RE74312P 1 239 IPR006687 GO:0005525|GO:0006886
Vimu6g01918 239 ProSiteProfiles small GTPase SAR1 family profile. 14 238 - -
Vimu6g01918 239 CDD Sar1 2 238 - -
Vimu6g01918 239 SMART sar_sub_1 4 238 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01918 Vimu-Chr6 17286298 17288202 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01918 K07953 - gmx:100305650 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00121 10 683723 687777 Vimu6g01918 6 17286298 17288202 ECH
Vimu6g01918 6 17286298 17288202 Vimu6g01918 6 17286298 17288202 ECH