Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00121 ATTTACCCCTTTGGTGGAAGTGTGGCGATGCCTCTTGGGCTTCTTGATGCCATTTTTGTGGGCCTTGTAGGACTGACACGTGATCTAGGATCTCTCTTTCTCTCTCTCTGGGATCTGCTTCCGTCTCTTTTCAATTTCCATTCTTCATTTTCATTCCTCCGATCTGCGACTGTTCTCTCTTACCCCAACACAACACCACACATCATGTTTCTCTTCGACTGGTTCTATGGCATTCTCGCTTCCCTTGGTCTATGGCAGAAAGAAGCCAAGATTCTCTTCCTCGGTCTCGATAATGCCGGCAAGACCACTCTCCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCATCAGCCGACCCAGCACCCCACTTCGGAGGAATTGAGCATTGGGAAGATCAAGTTTAAGGCTTTCGATTTGGGGGGTCATCAAGTTGCTCGCAGGGTCTGGAAAGACTATTATGCCAAGGTGGATGCTGTTGTATACCTGGTCGACGCCTACGACAAAGAGAGGTTTGCAGAATCTAAGAAGGAGCTTGATGCTTTGCTTTCAGATGAAGGCTTGGCAGGTGTTCCTTTTCTTGTGCTTGGCAACAAGATTGACATCCCTTATGCAGCATCAGAAGACGAGCTCCGGTATCATCTAGGCCTGACCAATTTCACCACTGGCAAAGGAAAGATCAACCTCACAGACTCCAACCTTCGACCCCTCGAAGTGTTCATGTGCAGCATTGTGCGCAAGATGGGGTATGGTGAAGGCTTCCAGTGGCTTTCCCAGTACATCAAGTAG 786 0.4847 IYPFGGSVAMPLGLLDAIFVGLVGLTRDLGSLFLSLWDLLPSLFNFHSSFSFLRSATVLSYPNTTPHIMFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEGLAGVPFLVLGNKIDIPYAASEDELRYHLGLTNFTTGKGKINLTDSNLRPLEVFMCSIVRKMGYGEGFQWLSQYIK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00121 261 Pfam ADP-ribosylation factor family 76 260 IPR006689 GO:0003924|GO:0005525
Vimu10g00121 261 ProSiteProfiles small GTPase Arf family profile. 82 260 - -
Vimu10g00121 261 ProSiteProfiles small GTPase SAR1 family profile. 82 260 - -
Vimu10g00121 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 260 IPR027417 -
Vimu10g00121 261 FunFam GTP-binding protein SAR1A 69 261 - -
Vimu10g00121 261 SMART sar_sub_1 72 260 IPR006689 GO:0003924|GO:0005525
Vimu10g00121 261 PRINTS GTP-binding SAR1 protein signature 234 258 IPR006689 GO:0003924|GO:0005525
Vimu10g00121 261 PRINTS GTP-binding SAR1 protein signature 145 170 IPR006689 GO:0003924|GO:0005525
Vimu10g00121 261 PRINTS GTP-binding SAR1 protein signature 90 113 IPR006689 GO:0003924|GO:0005525
Vimu10g00121 261 PRINTS GTP-binding SAR1 protein signature 118 142 IPR006689 GO:0003924|GO:0005525
Vimu10g00121 261 PRINTS GTP-binding SAR1 protein signature 190 211 IPR006689 GO:0003924|GO:0005525
Vimu10g00121 261 Gene3D - 67 261 IPR027417 -
Vimu10g00121 261 CDD Sar1 70 260 - -
Vimu10g00121 261 NCBIfam small GTP-binding protein domain 87 203 IPR005225 GO:0005525
Vimu10g00121 261 PANTHER RE74312P 69 261 IPR006687 GO:0005525|GO:0006886
Vimu10g00121 261 SMART arf_sub_2 72 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00121 Vimu-Chr10 683723 687777 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00121 K07953 - gmx:100306687 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00121 10 683723 687777 Vimu10g00121 10 683723 687777 ECH
Vimu10g00121 10 683723 687777 Vimu6g01918 6 17286298 17288202 ECH