Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01898 ATGAAGACGGGCTCCATGATTTTTTCATTATTAAATCTACCTAGATGTAGATTACAAAGATTAGCTAATTACTGGGGAGAAACCTTCCACAGTTTCAGTACGACTTGTGGAAACAAATCTAGCATCAGGCCGGTTGTTTATAGAATTCATGGTCTTCAGGGAGGTCAGAGAAAGAAGTGGACAAGACCAATATCCACAAATTCAGAAGGCAAGGGGAGCACCAAATCAAAAAGTATCAAGCATGAAATTTTGAGTGAAACCATTATAGCAGGTGCTACAATAGATGTAAATAAAACACAGCTTGATCAGTTCCAGGAAATTCAGTACCGTGACATAAAACAAGAGATTGCCCAGAATAAAGACTTGTCTAGTTTAGTTACTGTTATTGTTTTTGATATCGAAACCACAGGGCTCAGCAGAGAGAATGAAAGGATTATTGAAATTGCACTTCGAGATCTTCAGGGTGGTGAGAACAGCACTTTTCAGACTCTAGTCAACCCTCAACGCGAAGTTCCTAATTCACATATTCATGGCATTACTACTCATATGGTCAACAAACCTGAAGTTCCAAGGATGGAAGAGCTCATTCCTATCTTATTGAAATATGTTCGAAGTCGTGAGAAACCTGGGGGATATGTGTTATTTGTTGCTCATAATGCTCGTTGTTTTGATGTCCCTTTCATCATCAACGAATTCCGACGTTGTTCTGCGAACATTCCTCATAACTGGTTGTTCTCAGACACCCTGCCTTTAGGACGTGAACTAATAAAATCTGAAGGAACTAAACTTTCTTCATCTTCCCTTCCTGCCCTTGGTGACCGCTACGGAATTAAAGGGGATGGACCAGCTCACAGGGCTATGGAAGATGTGAACACATTGTCTTTGATTTTTCCCTACTTGATCCGTGATCTGAAATTGACCCTATCTTCTCTTGTCGAAAAATCATTCAAAGAATCAGATATCATCAACTCCAAGAAGAAGAAAAATTCAGACTAG 996 0.3966 MKTGSMIFSLLNLPRCRLQRLANYWGETFHSFSTTCGNKSSIRPVVYRIHGLQGGQRKKWTRPISTNSEGKGSTKSKSIKHEILSETIIAGATIDVNKTQLDQFQEIQYRDIKQEIAQNKDLSSLVTVIVFDIETTGLSRENERIIEIALRDLQGGENSTFQTLVNPQREVPNSHIHGITTHMVNKPEVPRMEELIPILLKYVRSREKPGGYVLFVAHNARCFDVPFIINEFRRCSANIPHNWLFSDTLPLGRELIKSEGTKLSSSSLPALGDRYGIKGDGPAHRAMEDVNTLSLIFPYLIRDLKLTLSSLVEKSFKESDIINSKKKKNSD 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01898 331 Pfam Exonuclease 129 293 IPR013520 -
Vimu6g01898 331 SUPERFAMILY Ribonuclease H-like 125 307 IPR012337 -
Vimu6g01898 331 PANTHER THREE PRIME REPAIR EXONUCLEASE 1, 2 65 327 IPR040393 GO:0008408
Vimu6g01898 331 MobiDBLite consensus disorder prediction 59 73 - -
Vimu6g01898 331 CDD DEDDh 129 297 - -
Vimu6g01898 331 Gene3D - 126 317 IPR036397 GO:0003676
Vimu6g01898 331 SMART exoiiiendus 127 306 IPR013520 -
Vimu6g01898 331 MobiDBLite consensus disorder prediction 58 77 - -
Vimu6g01898 331 FunFam Exonuclease DPD1 chloroplastic/mitochondrial 126 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01898 Vimu-Chr6 17175407 17177841 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01898 - - gmx:100807346 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01898 6 17175407 17177841 Vimu3g02039 3 35290206 35292651 ECH
Vimu6g01898 6 17175407 17177841 Vimu6g01898 6 17175407 17177841 ECH
Vimu6g01898 6 17175407 17177841 Vimu3g02039 3 35290206 35292651 PCT