Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02039 TTCTTACAAATGCTTTTCCTTTTGTGTCTAGCTACATTCAAAACCTCCTCGTCCTTGCACTTGCATTGCCAGGGAATTTTTGAACTGATGAGGACAAGGTCTTGTATTTTTTCCTTATTGCAAGTACCCAGATGCAGCATACATAGCTTAGCCAAATGTAGAGAAGATGAAGCATTATGCGGTTTTATCAAGATCTATGGAAACAAATCTAGCATAAGAATACATGGTTCTAGAATTTATGAGTCTGAGAGAGGATTCGCTACTAAGTGGATTAAAAGACCTGTAACTACAAGAGCAGAAGGAAGTAAACAAACCACTTGGAACACCAAATCAAGAAGTATCAAGCATGAAAGTTTTAGAGAAGAGATTTTACCAAGTGCTACAGTGAATGAAAACACGACACAGCTAGATCAGTTCCAGAAAATTCAGTGGCCTCAAGTGCAAGAAATTGCTCAGTATAAAAATTTATCTGACCTACTCACTGTTTTTGTTTTTGATGTTGAGACTACTGGGTATAGCAGAGTAAATGATCGGATCATTGATGTTGCACTTCGAGATCTCCAAGGTGGTGAGCACAGCACTTTCCAAACTCTTGTAAATCCTCAATGCCATGTTCCTAATTCACACGTTCATGGAATTCTTACCCATATGGTGAACCGAACTGATGTGCCAAGGATGGAAGAGCTGGTACCCATCTTGTTGCAGTACATTAGAAGCCGTGAGAAACATGGTGGATACGTGTTATGGATTGCACATAATGCTCGCGCTTTTGATGCACCTTTTCTCATGCACGAGTTCATTCGATGTTCCATGGAGATTCCTCATAATTGGCTGTTTCTGGACACCCTTACTCTGGCACGTCAACTGATAAAGTCTGGTGGAACAAACCTTTCTTCAGCTTCACTGGTTGCCCTTCGTGACTTTTACAGAGTTGAAGTAGATGGATCAGCCCACAGAGCCATGGTAGATGTGAACACATTGTCTCAGGTACTTCCCGTGTTGACCTCTGATCTGAAGTTGACTTTATCCAGCCTTGTCAAAAAATCTTTCAATTTCTCAGATTTGAAGATAAGGGCTAAGAAAAGATAG 1089 0.4059 FLQMLFLLCLATFKTSSSLHLHCQGIFELMRTRSCIFSLLQVPRCSIHSLAKCREDEALCGFIKIYGNKSSIRIHGSRIYESERGFATKWIKRPVTTRAEGSKQTTWNTKSRSIKHESFREEILPSATVNENTTQLDQFQKIQWPQVQEIAQYKNLSDLLTVFVFDVETTGYSRVNDRIIDVALRDLQGGEHSTFQTLVNPQCHVPNSHVHGILTHMVNRTDVPRMEELVPILLQYIRSREKHGGYVLWIAHNARAFDAPFLMHEFIRCSMEIPHNWLFLDTLTLARQLIKSGGTNLSSASLVALRDFYRVEVDGSAHRAMVDVNTLSQVLPVLTSDLKLTLSSLVKKSFNFSDLKIRAKKR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02039 362 FunFam Exonuclease DPD1 chloroplastic/mitochondrial 160 344 - -
Vimu3g02039 362 SUPERFAMILY Ribonuclease H-like 158 341 IPR012337 -
Vimu3g02039 362 Gene3D - 160 351 IPR036397 GO:0003676
Vimu3g02039 362 SMART exoiiiendus 161 340 IPR013520 -
Vimu3g02039 362 CDD DEDDh 164 331 - -
Vimu3g02039 362 PANTHER THREE PRIME REPAIR EXONUCLEASE 1, 2 90 352 IPR040393 GO:0008408
Vimu3g02039 362 Pfam Exonuclease 164 329 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02039 Vimu-Chr3 35290206 35292651 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02039 - - vra:106770524 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01898 6 17175407 17177841 Vimu3g02039 3 35290206 35292651 ECH
Vimu3g02039 3 35290206 35292651 Vimu3g02039 3 35290206 35292651 ECH
Vimu6g01898 6 17175407 17177841 Vimu3g02039 3 35290206 35292651 PCT