Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01871 ATGGCTTTGATTGTCAACCTTCCCATTGGGACCCCACCGCAGGTTCAGCCTATGGTGTTGGACACCGGAAGCCAACTATCGTGGATTCAGTGTCACAGAAAACCACCCAAGGTGCCTCCCCCAACCATCTCCTTTGACCCTTCTCGCTCCTCCACTTTCTCTACTCTTCCCTGTACTCACCCCGTTTGCAAGCCACGAATTCCCGATTTTACCCTCCCCACTTCCTGCGACCAGAACCGCCTCTGTCACTACTCCTACTTCTACGCCGACGGTACCTACGCCGAGGGAAATCTCGTCAGAGAAAAATTCACATTCTCCCGTTCCCTTTTTACCCCTCCATTGATCCTCGGCTGCGCCACCGAGTCCACCGACCCCAGGGGCATTTTGGGAATGAATCGTGGACGCCTCTCCTTCGCTTCACAATCTAAAATCACCAAATTCTCCTACTGCGTTCCCACCCGAGAAACCCGACCCGGATCCACTCCAACCGGGTCGTTCTACCTGGGCCACAACCCGAACTCTCTCCGGTTTCGGTTTATCCCGATGTTGACTTTTGCTCAGAGTCAACGTATGCCAAATCTTGACCCCTTGGCTTACACTGTCGCCTTGCAGGGGATAAGAATCGGAGGCAGAAAACTGAACATTTCGCCGGCGGTTTTTCACGCCGACGCTGGCGGGTCGGGTCAAACCATGGTTGACTCCGGATCCGAGTTTACTTACCTCGTTGATGAGGCTTATGATAAGGTGCGGGCGGAAGTAGTGAGGAGTGTGGGGCCCAGAATGAAGAAGGATTACGTGTACGGTGGCGTTGCGGACATGTGCTTCGACGGGAATGCGATTGAGATCGGACGGCTTATAGGGGACATGGTGTTTGAGTTCGAGAAGGGCGTGGAAATAGTGATTCCCAAGGAGAGGGTTCTGGCTTCCGTGGAGGGCGGGGTCCACTGCGTCGGGATTGGCAACTCTGATAAATTGGGTGCGGCCAGTAACATCATCGGGAATTTCCATCAGCAGAATCTGTGGGTGGAATTTGATCTCGCCAATCGCAGAGTGGCAGATTGGCTCCATAGAAGGAAACCCTTAGATACGTGTTGGTGCATGTACCTTACGGAATTTTGTACTAAGGAAAATCACGTGGCACGTGTCGAGGAGTGTGATACCGGTGAGATGATGATGATGATGAAGTTGAAAGTAATCACACGGTCCAAGAGCGATGAAGAAAAAGAAAGTTCTGCAAGTACGTTCGTTGCTTACGTGCATACACAAAATTACTACTATAAATACGAAATCGGTTTGGGCAATCCTGGAAGGCGTTTGGCAAAGGACAAAGGCATTAGTAGTAGAAGGAAGAAAGTGAAGGAACAAGATTTTACGATTACGAAGAAGAAACGAAGTGGGATGGGACATGAACAACTACTTTCGAATAGTTCGCCGCCCGAGACACTTCTAATTCCCGACAATATCTTTCCTATGATTAAAATGGCAGATGGAAGACAGTGGGACAGGTTAGTGGTAGGGGTCAAAAAAGCAAACATGGAATGGCCCATAACCATAAATGACTATGGCGGGTTATGCACTTGTGGTGGCCTCTACTGCTTTGTAAAGCCAATTGCTATGGGTTTCACCCTACCACCACAAGGAGATGAAGTTCTTTGCGTTGCAATCACTGGGACACCTTCAATTTGCAAGTTCTCTGGATCAAGAAAGCTTAAGATTAGAGAGAAGGCAGAAAATAGAAGTGAGGAAGAATATGTTGAAGCAGGTATAGGAGAGAGTAGAGGAGTGAAGGGTGAAAAAGGGGAAAGAGATTTGTTGGAGGGGAGAATAGAGAATAGGTGGAAACTATGGCTAAGTTGGAAATGTGGAAAGTTGGGATATAATATTCCACCTGGGAACCAAAGATTCCTTCGGCCGTCGCATGTTGCATCCCCATCTCCCATTCCAAACAGAGCCATTACCTATCGAAAGAAAGAGAAAGCGAATCAGAAAGTAAAAAAGAGAGAATGGGGTTTGACCCACCTCGAGGCTCCTGCTCTCTTCCCAAAACCCTACCATCTTCCTCCGAACTATCGTCTCCAAGCCTCAGCTTTGCAATCCCGAGGCCTCCGCCGCGCAGCGGGTGCGGCCGCCGCGGACTCCTGGTTAGCTTATACCGTTAATGTTAGAGTGATGATTTCGAATTATGTCGCACGGCTTCACTTATGGCTCTCTCGATTTTCAGATGAGCTATCGATCGAGGAAGAAGCCGAAAGGAAAGATACCATTTCTTTCCTTATATGGGTATCCGCAATTTTCCAGCAACAATTTCAACTTGTAAAGTATTCATGTGCTCTTTGTAGTTCTAGCCTTACAGTGTTGTTGAAACACAAATTTTCAGGAGATAATTTGATGCAACAGTCTATTTCGCTTTTGCGTGTCAAGGATCCCTTGTTCAAAAGGATGGGAGCTTCTAGATTGACTCGTTTTGCAACAGATGATGAAAGAAGAAAGAAGATAATTGAGATGGGTGGAGCTCAAGAACTCTTAAATATGTTAAGCACAGCGAAAGATGACCGGACACGGAAAGCAGCATTGCAAGCTCTTGATGCACTATTACACTCAGACCTTTTCAAAATATACTTATTATCAAGCTCTCTTGGAGAGGTAGATTTAAGATCGATGTACTTCATTGTTATAGAGGAAGCTCTAGCATCCATGCATCAGATTGGGGCCGTTTCAATAATTAGGACTGTACCAAATTCACCTGAGGATGCAGAAGTTGAGGGTTTCAAGTTGAGCTTGATGAAAAGGTTTCAAGATCTGAGATATGATGAGAGAGTAAGCCGGCAACCAAAGCATTTTTGGGGAAGAGAAATGGAAGTTATTGTGTATCCTTTGGCTAAATCCAATAAAGATCATAGTTATACTGAGCCAAAAGACCCCATGATTTGTGGTCCTGATGGACGATTTAAGGCTGTTAACTGGTGTCATGCCTTTGCTGTGGTATCATAG 2991 0.4684 MALIVNLPIGTPPQVQPMVLDTGSQLSWIQCHRKPPKVPPPTISFDPSRSSTFSTLPCTHPVCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSRSLFTPPLILGCATESTDPRGILGMNRGRLSFASQSKITKFSYCVPTRETRPGSTPTGSFYLGHNPNSLRFRFIPMLTFAQSQRMPNLDPLAYTVALQGIRIGGRKLNISPAVFHADAGGSGQTMVDSGSEFTYLVDEAYDKVRAEVVRSVGPRMKKDYVYGGVADMCFDGNAIEIGRLIGDMVFEFEKGVEIVIPKERVLASVEGGVHCVGIGNSDKLGAASNIIGNFHQQNLWVEFDLANRRVADWLHRRKPLDTCWCMYLTEFCTKENHVARVEECDTGEMMMMMKLKVITRSKSDEEKESSASTFVAYVHTQNYYYKYEIGLGNPGRRLAKDKGISSRRKKVKEQDFTITKKKRSGMGHEQLLSNSSPPETLLIPDNIFPMIKMADGRQWDRLVVGVKKANMEWPITINDYGGLCTCGGLYCFVKPIAMGFTLPPQGDEVLCVAITGTPSICKFSGSRKLKIREKAENRSEEEYVEAGIGESRGVKGEKGERDLLEGRIENRWKLWLSWKCGKLGYNIPPGNQRFLRPSHVASPSPIPNRAITYRKKEKANQKVKKREWGLTHLEAPALFPKPYHLPPNYRLQASALQSRGLRRAAGAAAADSWLAYTVNVRVMISNYVARLHLWLSRFSDELSIEEEAERKDTISFLIWVSAIFQQQFQLVKYSCALCSSSLTVLLKHKFSGDNLMQQSISLLRVKDPLFKRMGASRLTRFATDDERRKKIIEMGGAQELLNMLSTAKDDRTRKAALQALDALLHSDLFKIYLLSSSLGEVDLRSMYFIVIEEALASMHQIGAVSIIRTVPNSPEDAEVEGFKLSLMKRFQDLRYDERVSRQPKHFWGREMEVIVYPLAKSNKDHSYTEPKDPMICGPDGRFKAVNWCHAFAVVS 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01871 996 Pfam Xylanase inhibitor N-terminal 5 159 IPR032861 -
Vimu6g01871 996 Gene3D Acid Proteases 170 357 IPR021109 -
Vimu6g01871 996 ProSiteProfiles Peptidase family A1 domain profile. 3 354 IPR033121 -
Vimu6g01871 996 SUPERFAMILY ARM repeat 794 873 IPR016024 -
Vimu6g01871 996 CDD pepsin_A_like_plant 4 351 IPR034161 -
Vimu6g01871 996 PANTHER OS07G0603500 PROTEIN-RELATED 4 351 - -
Vimu6g01871 996 SUPERFAMILY Acid proteases 5 351 IPR021109 -
Vimu6g01871 996 Gene3D - 754 881 IPR011989 -
Vimu6g01871 996 Gene3D Acid Proteases 3 169 IPR021109 -
Vimu6g01871 996 FunFam Aspartyl protease family protein 1 165 - -
Vimu6g01871 996 Pfam Xylanase inhibitor C-terminal 198 351 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01871 Vimu-Chr6 16944817 16958971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01871 5 345 Miscellaneous Gene Families AT1G44130 21.958 1.42e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01871 - - gmx:100803089 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01871 6 16944817 16958971 Vimu6g01871 6 16944817 16958971 ECH
Vimu6g01871 6 16944817 16958971 Vimu1g01129 1 8613535 8614824 PCT