Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01129 ATGGCTCTGTGTTCCCCTGTTTCACTCTTTTCACTTCTCTTTGCGGTGTTGTTGTTGTTTTCCGCTTCCTCCTCCGCCAAACATGATTCGGTCTCGTTCTCTTTCCATCTCAGGTCGCTTCCCCTCTCTGCAGGGAAGCCTCTCAAGACGAACCCAAAACTCAGAAGCCTTTCCTCGGCCTCGTACAACGTAAAATGGCCGTTCAAGTATTCGATGGCTCTGGTGGTAAGTCTCCCCATAGGGACACCTCCGCAGCATCAACAAATGGTTTTGGACACCGGTAGCCAACTCTCGTGGATTCAGTGCCACAACAAAACTCCCCCAACGGCGTCCTTTGACCCTTCTCTCTCCTCCTCTTTCTACGTCATCCCCTGCACCCACCCTCTCTGCAAACCTCGCGTCCCCGATTTTACTCTCCCAACAACATGCGACCAGAACCGCCTCTGCCACTACTCCTACTTCTACGCCGATGGCACCTACGCCGAGGGCAACCTCGTCCGAGAAAAACTAACCTTCTCCCCTTCCCAAACAACCCCTCCACTTACCCTCGGCTGCGCCACCGAGTCCCGCGACGCCGGCGGCATTCTCGGAATGAACCTCGGCCGCCTTTCCTTTCCCTCGCAGGCCAAAATCACCAAATTTTCGTACTGCGTCCCCACCCGACAATCCCGATCCGGGAACCTTCCAACCGGGTCGTTCTACCTCGGCAACAATCCCAACTCCGGCCGCTTCCGTTACGTCAGCATGTTGACGTTTAGTCAAAGTCAACGCATGCCGAATTTGGACCCGCTGGCCTACACCGTCCCCATGCAGGGAATTAGAATTGGTGGCAAGAGGCTAAATATCAATCCTTCCGTTTTCCGCCCTGACGCCGGCGGGTCGGGGCAGACCATGATCGACTCCGGGTCCGAATTCACCTTCTTAGTCGACGAGGCTTACGACAGGGTGCGCGAGGAGGTGGTTAGAGTTGTGGGGCCAAGGATTAAGAAGGGGTACGTGTACGGCGGAGTCGCGGACATGTGTTTTGAGGGTTCCGAGAGGGAGTCAATCGGGCGGCTGATAGGGGATGTGGTGTTGGAATTCGAGAAAGGCGTGGAGATAGTGGTTCCAAAGGAGAGGTTGCTGGCTGACGTGGGCGGTGGGGTCCATTGCGTGGGAATTGGCAGGTCAGAGAGATTGGGTGCGGCCAGCAACATCATAGGGAACATCCATCAGCAGAATCTGTGGGTGGAGTTCGACCTGGCGAATCACAGAGTCGGATTCGGTGAGGCGGATTGTAGCAGATCGTAG 1290 0.5581 MALCSPVSLFSLLFAVLLLFSASSSAKHDSVSFSFHLRSLPLSAGKPLKTNPKLRSLSSASYNVKWPFKYSMALVVSLPIGTPPQHQQMVLDTGSQLSWIQCHNKTPPTASFDPSLSSSFYVIPCTHPLCKPRVPDFTLPTTCDQNRLCHYSYFYADGTYAEGNLVREKLTFSPSQTTPPLTLGCATESRDAGGILGMNLGRLSFPSQAKITKFSYCVPTRQSRSGNLPTGSFYLGNNPNSGRFRYVSMLTFSQSQRMPNLDPLAYTVPMQGIRIGGKRLNINPSVFRPDAGGSGQTMIDSGSEFTFLVDEAYDRVREEVVRVVGPRIKKGYVYGGVADMCFEGSERESIGRLIGDVVLEFEKGVEIVVPKERLLADVGGGVHCVGIGRSERLGAASNIIGNIHQQNLWVEFDLANHRVGFGEADCSRS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01129 429 PANTHER ASPARTYL PROTEASE-RELATED 11 427 IPR001461 GO:0004190|GO:0006508
Vimu1g01129 429 Pfam Xylanase inhibitor C-terminal 265 422 IPR032799 -
Vimu1g01129 429 Gene3D Acid Proteases 241 429 IPR021109 -
Vimu1g01129 429 PRINTS Pepsin (A1) aspartic protease family signature 297 308 IPR001461 GO:0004190|GO:0006508
Vimu1g01129 429 PRINTS Pepsin (A1) aspartic protease family signature 398 413 IPR001461 GO:0004190|GO:0006508
Vimu1g01129 429 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Vimu1g01129 429 SUPERFAMILY Acid proteases 75 427 IPR021109 -
Vimu1g01129 429 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 89 100 IPR001969 GO:0004190|GO:0006508
Vimu1g01129 429 Pfam Xylanase inhibitor N-terminal 75 231 IPR032861 -
Vimu1g01129 429 CDD pepsin_A_like_plant 75 426 IPR034161 -
Vimu1g01129 429 Gene3D Acid Proteases 61 232 IPR021109 -
Vimu1g01129 429 ProSiteProfiles Peptidase family A1 domain profile. 74 422 IPR033121 -
Vimu1g01129 429 FunFam Aspartyl protease family protein 54 232 - -
Vimu1g01129 429 FunFam aspartic proteinase PCS1 236 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01129 Vimu-Chr1 8613535 8614824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01129 20 428 Miscellaneous Gene Families AT1G77480 23.864 2.74e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01129 - - gmx:100790706 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01129 1 8613535 8614824 Vimu1g01129 1 8613535 8614824 ECH
Vimu6g01871 6 16944817 16958971 Vimu1g01129 1 8613535 8614824 PCT