Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01864 ATGGCCAAGCACTTTCTTCTTCTTTTTCTTCTTCTTGCAGTGTATGTGGCTGCAATTGATGAAGAACCATTCATTGGGGTGAATATTGGAAGAGATCTCTCAGATATGCCTCACCCCACTCAAGTAGTGGCACTACTTAAAGCTCAGCAAATTCGACATGTTAGATTGTATGATGCTGACCAAGCAATGCTCATTGCCCTTGCAAACACAGGAATACGAGTTGCTGTGTCTGTTCCTAATGAAGAGATCCTAGCAATTGGTCAATCAAACACCACAGCTGCTAAGTGGGTTTCGCGTAATGTGGTGGCTCATTACCCTGCCACTAACATAACATCTATCTGTGTTGGTTCTGAGGTTTTAACTGCCCTCCCCAATGCGGCAAAAGTGCTTGTCAGTGCCCTTAAGTTCATTCATTCGGCCCTTCTGGCGTCAAATCTTGATCACCAAATTAAAGTTTCAACACCCCTTTCCTCTTCCATGATCCTTGACTCATTTCCACCTTCACAAGCCTTCTTCAACCGCTCGCTGAATCCAGTCTTGGTTCCAATGTTTGATTTCTTGCAAAGCACTGGTTCTTATCTAATGCTCAACACCTACCCTTACTATGATTATATGAAGTCAGATGGTGTGTTCCCGTTGGACTATGCACTCTTCAAACCCCTCCCTCCAAACAAAGAAGTCATCGATTCTAACACTCTTCTCCACTACTCCAACGTGTTTGATTCTGTGATTGATGCAGCATACTTTGCCATGGCTTTTCTCAACTACACGAACATTCCTGTGGTGGTGAGTGAAACAGGTTGGCCCTCAAAAGGTGACTCTAATGAACCAGATGCAACAGTAGAAAATGCCAACACTTACAACAGCAATTTGATCAAGCATGTGCTTAACGTAACTGGAACTCCCAAACACCCCGGCATTGGTGTTAGTACTTACATCTATGAACTCTACAATGAGGATGCCAAGGCAGGTTCATTGTCTGAGAAGAACTGGGGTTTGTTTGACGCAAATGGGAAACCTATTTATGTTTTACGGTTAACAGAATCAGGAGGAGTGCTAGCAAATGACACCACCAATCAAACTTACTGTGTTGCAAAAGATGGTGCTGATCCGAAGATGCTGCAAGCTGGAATAGATTGGGCATGTGGACCTGGCAAGGGACAACTATGTTATGAACCAGACAACGTAGTTGCACATGCAAATTATGCTTTTGACACTTACTATCATCAGATGGGAAAGTCTCCTCAGTCTTGTGATTTCAATGACATGGCTACAATCTCCACCACCAATCCTAGTCATGGATCATGTGTGTTTCCAGGAAGTCATGGCAACAATGGAACCTTCCCTAACGTCACATTATCATCGATGAATTCAACAAATGCAGATTCTTCTGCCTGGAATCTACATCATGGTGTGAGAAGCCCTGTAATGATGATAGTACATCTGCTCATGGGAGTGGTTTGGCTATAA 1470 0.4347 MAKHFLLLFLLLAVYVAAIDEEPFIGVNIGRDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLIALANTGIRVAVSVPNEEILAIGQSNTTAAKWVSRNVVAHYPATNITSICVGSEVLTALPNAAKVLVSALKFIHSALLASNLDHQIKVSTPLSSSMILDSFPPSQAFFNRSLNPVLVPMFDFLQSTGSYLMLNTYPYYDYMKSDGVFPLDYALFKPLPPNKEVIDSNTLLHYSNVFDSVIDAAYFAMAFLNYTNIPVVVSETGWPSKGDSNEPDATVENANTYNSNLIKHVLNVTGTPKHPGIGVSTYIYELYNEDAKAGSLSEKNWGLFDANGKPIYVLRLTESGGVLANDTTNQTYCVAKDGADPKMLQAGIDWACGPGKGQLCYEPDNVVAHANYAFDTYYHQMGKSPQSCDFNDMATISTTNPSHGSCVFPGSHGNNGTFPNVTLSSMNSTNADSSAWNLHHGVRSPVMMIVHLLMGVVWL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01864 489 Pfam X8 domain 362 425 IPR012946 -
Vimu6g01864 489 Pfam Glycosyl hydrolases family 17 25 344 IPR000490 GO:0004553|GO:0005975
Vimu6g01864 489 Gene3D Glycosidases 24 351 - -
Vimu6g01864 489 FunFam Glucan endo-1,3-beta-glucosidase 3 24 349 - -
Vimu6g01864 489 SMART X8_cls 361 438 IPR012946 -
Vimu6g01864 489 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Vimu6g01864 489 FunFam Glucan endo-1,3-beta-glucosidase 4 356 442 - -
Vimu6g01864 489 Gene3D - 355 438 - -
Vimu6g01864 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 12 426 IPR044965 GO:0004553|GO:0005975
Vimu6g01864 489 SUPERFAMILY (Trans)glycosidases 25 344 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01864 Vimu-Chr6 16826788 16829489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01864 20 470 Glycoside Hydrolase AT1G66250 71.800 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01864 K19891 - gmx:100811077 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01864 6 16826788 16829489 Vimu6g01864 6 16826788 16829489 ECH
Vimu6g01864 6 16826788 16829489 Vimu1g01114 1 8500732 8504323 PCT