Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01114 ATGAGAGATGCATTTATTGGAGTGAACATTGGAACAGATCTCTCTGATATGCCACATCCTACTCAAGTAGTAGCTCTACTTAAAGCCCAGCAAATCCGGCATGTTCGATTGTATGATGCAGACCAAGCTATGCTCCTTGCACTTGCAAAGACAGGCATTCAAGTTGTTGTGACTGTTCCTAATGAAGAACTCCTTGCAATTGGTCAATCAAATTCCACAGCCGCTAACTGGGTTTCCCGCAATGTGGTAGCACATTATCCAGCAACCAATATCACAGCCATTTGTGTTGGTTCTGATGTTTTAACTTCCCTCCCAAATGCAGCAAAAGTTCTTGTCAGCGCCATTAAGTACATTCATTCAGCCCTTGTTGCATCCAATCTTGATCGCCAAGTTAAAGTTTCCACACCCCTTTCATCTTCCATCATCCTTGATTCATTTCCACCTTCCCAGGCGTTCTTCAACCGTTCACTCAATCCAGTTTTAGTCCCTCTACTTGATTTCTTGCAATCCACTGGATCTTATCTAATGCTGAACATTTACCCTTACTATGACTACATGCAATCAAATGGAGTGATTCCATTAGACTATGCACTCTTCAAAACTCTCCCTCCCAACAAAGAGGCTGTGGATTCAAATACCCTTCTTCACTACACCAATGTCTTTGATGCCATGGTTGATGCTGCATACTTTGCCATGGCTTTTCTGAACTACACCAACATTCCTGTAGTAGTGACTGAGTCAGGGTGGCCCTCGAAAGGTGGCTCCAACGAGCCTGATGCAACGGTAGACAATGCCAACACTTACAACAGCAATCTGATCAAGCATGTGTTTAACAAAACCGGAACTCCCAAACATCCTGGAATTGCAGTCAGTACTTACATATATGAGCTCTACAACGAGGATACGAAGCCAGGGCCATTATCTGAGAAGAACTGGGGACTATTTGATTCAAATGGAGCACCTGTTTACATTCTTCGCTTGACAGAATCAGGGGCACTCCTTGCAAATGATACCAGCAATCAAACCTTCTGCATTGCCAAGGATGGTGCTGATCCAAAAATGCTGCAGGCTGCATTAGATTGGGCATGTGGACCAGGCAAGGTCGAATGCTCTCCGTTGCTGCAAGGGCAACCATGCTATGAACCAGACAATGTGATTGCTCATGCAAATTATGCTTTTGACACTTACTATCATAAGATGGGAAAAACTCCCGATGCCTGTGACTTCAATGGTGTAGCTACCATCTCCACCTCAGATCCAAGTAAGTTGTTTACTTCAATGGAATAG 1287 0.4398 MRDAFIGVNIGTDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLLALAKTGIQVVVTVPNEELLAIGQSNSTAANWVSRNVVAHYPATNITAICVGSDVLTSLPNAAKVLVSAIKYIHSALVASNLDRQVKVSTPLSSSIILDSFPPSQAFFNRSLNPVLVPLLDFLQSTGSYLMLNIYPYYDYMQSNGVIPLDYALFKTLPPNKEAVDSNTLLHYTNVFDAMVDAAYFAMAFLNYTNIPVVVTESGWPSKGGSNEPDATVDNANTYNSNLIKHVFNKTGTPKHPGIAVSTYIYELYNEDTKPGPLSEKNWGLFDSNGAPVYILRLTESGALLANDTSNQTFCIAKDGADPKMLQAALDWACGPGKVECSPLLQGQPCYEPDNVIAHANYAFDTYYHKMGKTPDACDFNGVATISTSDPSKLFTSME 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01114 428 Gene3D - 336 427 - -
Vimu1g01114 428 SMART X8_cls 342 424 IPR012946 -
Vimu1g01114 428 FunFam Glucan endo-1,3-beta-glucosidase 4 337 428 - -
Vimu1g01114 428 SUPERFAMILY (Trans)glycosidases 6 325 IPR017853 -
Vimu1g01114 428 ProSitePatterns Glycosyl hydrolases family 17 signature. 240 253 IPR000490 GO:0004553|GO:0005975
Vimu1g01114 428 Pfam X8 domain 343 414 IPR012946 -
Vimu1g01114 428 Pfam Glycosyl hydrolases family 17 6 325 IPR000490 GO:0004553|GO:0005975
Vimu1g01114 428 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 415 IPR044965 GO:0004553|GO:0005975
Vimu1g01114 428 FunFam Glucan endo-1,3-beta-glucosidase 3 5 330 - -
Vimu1g01114 428 Gene3D Glycosidases 5 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01114 Vimu-Chr1 8500732 8504323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01114 4 421 Glycoside Hydrolase AT1G66250 78.230 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01114 K19891 - gmx:100792634 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01114 1 8500732 8504323 Vimu1g01114 1 8500732 8504323 ECH
Vimu6g01864 6 16826788 16829489 Vimu1g01114 1 8500732 8504323 PCT