Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01807 ATGCAAATGCAAACTGGTTTTAACGCGGTAGAGGATCAATATGAGCTATGCGAGGCTGGATATCCAAACAAAACTGCTATAGCATGCATGATAAATGCAGAGATTAGTGCTGTGTTGGCAGTTATGCGAAGAAATGTTAGATGGGGAATTCATTACATTTCAGATGATGATCAATCAGAGCACTACCTTGTTCGGTCATTAAAGACGTTGAGGAGGCAAATTTTCTCATGGAAGAATCAATGGCGTGCCATCAACCCTGCCTTGTATCTCCAGCCTTTTCTGGATGTGATACGATCAGATGAAACTAGTGCGCCTATTACTGGTGTTGCTTTGTCATCTGTTTACAAAATCTTAACTCTAGATGTGATTGATAAGCATACTGTCAACGTTGGGGATACCATGCACTTGGTGGTTGATTCCGTCACTAGTTGCAGATTTGAAGTGACTGATCCTGGATCAGAAGAAGTGGTATTAATGAAGATTTTGCAAGTTCTTCTAGCTTGTGTTAAAGGTAAAGCATCTGTAATGCTGAGTAACCAACACGTTTGCACCATAGTGAACACTTGTTTCCGAATAGTTCATCAAGCAGGAACCAAAGGTGAGCTGTTCCAACGAATAGCACGGTACACAATGCATGAACTGGTTAGGTCTATATTTTCTCACCTTCAGAACATTGACAACACAAAGTGTGGATTCATAAATGGGAGCGCTACCTTAAAGCAAGTGACCAATGGACTAAATGACCATGCTTTGGCACGCAAAAAATTGGAAAATGAGAGGCTTAATTCTGCACGTGATGCTCAACCATTATCTACAATCACTGCTTCCGGCGCTGCACCTGTTGTGGCAGCAAATGCAGTGGATGAAAACACAGCTATTGCTAGCAGTGGCAATGAAACTGATCCACACGAATCACTGCTCATGACTGATGGGGTTCCTTGTATAGTGGAAATATTTCACTTCTTGTGTTCTTTGCTGAATGTCACTGAGCATATGGGAGTGAATCCTAGATCAAACACAATGACGTTTGATGAAGATGTGCCTCTTTTTTCGTTAACTTTGATTAATTCGGCCATAGAGTTGGGAGGGCCATCCTTCTGCCATCACCCAAGACTGCTGTGTTTAGTCCAGGATGAATTATTCTTCAATCTTATGCAATTTGGTTTATCAATGAGCCCTCTTGTACTTTCAATGGTGTGTAGCATTGTTCTCAATTTGTATCAACATCTTCGCCAAGAACTCAAGTTACAGCTAGAAGCATTTTTTTCTTGCGTAATTTTGAGGCTTGCACAAAGCAAATATGGTGCCTCATATCAGCAACAAGAGGTTGTGATGGAAGCACTTGTTGATTTTTGCAGGCAAAAAACATTCATGGTGGAGATGTACGCCAACTTTGACTGTGACATAAGTTGCAGTGATATTTTTGAAGATATTGTTGATTTGTTGTCCAAAAGTGCATTTCCTGTGAACAATCCATTATCTTCCATGCACATTCTTTCCTTAGATGGTCTTATTGCTGTAATGCAGGGAATTTCCGAAAGAATAGGTAGTGAATCTTTAAGTTCAAAACAATCTACTGTGAATTTTGAGGAGTATACACCATTCTGGATGGAAAAGTGTGACAGTTTTGATGACCCAAATGATTGGGTTCCTTTTGTCTGCCAAAGAAAGTACATAAAGAGAAAATTAATGATTGGAGCTGATCACTTCAATCGGGATATTAAGAAAGGTCTTGAGTTTCTCCAAGGAGCCCATCTTTTGCCTAACAAACCTGATTCCCAAAGTGTTGCCTGCTTTTTAAGATACACAGCTGGGTTGGATAAGAATTCCATTGGTGATTTCCTTGGAGATCATGATGAATTCTACATTCAGGTTCTTCATGAATTTGCTAAGACATTTGATTTCCATGATATGACCTTAGACACAGCCCTACGTGTATTTTTGGAGACTTTTAGGCTTCCTGGAGAATCACAGAAGATACACAGGGTGCTTGAAGCTTTCTCTGAGAGATATTATGAACAATCACCAGATATCCTAGCTAACAAGGATGCTGCTCTCGTGTTATCATACTCAATTATATTGCTTAATACTGATCATCATAATGTGCAGGTCAAAAAGAAGATGACAGAAGAGGATTTTATCCGAAATAATAGGCATATAAATGGTGGCAATGATCTGCCTCGAGAATTTCTGTCAGAGATTTACCATTCAATTTGTAAGAGTGAAATTCGTACCACTCTTGAACCAGGCTTTGGATTTCCTGAAATGACCCCAAGTCGGTGGATTTCTCTGATGCACGAGGCAAATAAAACTTCTCCATACATTGTCTCGGATTCCCGAGCATACTTAGATTATGATCTGTTTGTGTTGTTGTCAGGCCCAACAATTGTTGCCATTTCTGTGGCTTTTGATAATGCTGAAAATAAAGAGGTGTATCAAAGATGTATGGATGGATTCTTAGTTGCTGCTAAGATATCAGCCCACTATCGTCTTGAAAATGTACTTGATGATCTGGTTGTGTGCATCTGTAAGTTCATTACCATTTTGGATCCATTATCAGTTGAGGATTCTGTCCTGGCCTTGGGAGATGACACAAAAGTAAGAATTGCAACTGAGACAGTTTTCACAATTGCAAATAGGTATGGTGATTACATCCGCACAGGGTGGAGGAGTATTCTTGATTGTATTTTAATATTTTTCAAGTTAGGCCTCCTTCCTCCTCGCTTGGCCAGTGATGCAGCTGACGAGTCACAGGTAACTACAGAAATTGGACATGGAAAATCTAACTCATATTCTATAGTGTCATCTAATCTTCAATATATTGCTCCAAAGAGATCCTCAGGATTAATTAGTAGGTTTAGTCAACTCTTATCACTTGGTTCTGAAGAGATACAATCAATACCGACAAAAGAACAGCTGGTTGCTCATCAGCAAGCTACACAAGCAATTCAGAAGTGTCACATTGATAGCATATTCACTGAGAGTAAATTTCTGCAAGCTGAATCTCTATTGAATCTTGAAAGAGCACTCATCAATGTTGGAGCTCAACATCGGAAAGGAAACAGAATACTTGAGGATGAAGAGTCTTTAGTTTTCTGCCTGGAGTTATTGGTGGCAATTACTCTGAATAACAGGGACAGAGTTGTACTTCTTTGGAAGGGTGTTTATGAACACATATCCAATATTATTCAGTCAACTGTGATTCCTTGTGCTCTGGTAGAAAAAGCTATTTTTGGACTTCTTAGAATTTGCCACCGCTTACTTCCCTACAAAGAGAACATTACTGATGAGCTTTTGAGGTCCCTGCAACTTGTTTTGAAGCTTGACGCACTAGTTGCGGATGCATACTATGAGCAGATTACACGGGAAGTCGGTTGCCTTGTGAAGGCAAATGCTTCTCATATTAGATCTCAGTCTGGATGGTGGACTATTACAGCTCTGCTCTCAATCACTTCTAGACACTTGGAGTCATCTGAGGCTGGATTTGATGCGCTGCTGTTCATTATGTCTGATGGTGCTCACTTGCTCCCTGCTAATTACATTCTCTGTGTAGATGCTGCGAGACAGTTTGCCGAGTCTCGTGTGGGACAGGTAGATCGGTCTATAATTGCACTAGATCTTATGGCAAGTTCTGTCAATTCCTTAGAAAAATGGTCGAATAATGCTAAGAAAACTGTGAAACAACAGGAAGTGGAAAAGATGTTGCAGGATATTGGGGAGATGTGGTTTAGGCTAGTGCAGGGACTGGGGAAAGTATCTTTGGACCAGAGAGAGGAGGTTAGAAACCATGCATTGTTATGTTTACAGAAGTGCTTGAAAGGAACTGTTGGGACTCACCTCCCACGTGATTTGTGGTTGACATGTTTTGATCAAGTGATCTTCACTTTGCTCGAAGACCTGCTTGAAATTGCGCAGTCGCATTCTCAAAAGGTCTACCCAAACATAGAAGGAACACTTGTTATTGCCTTGAAGCTTGTGTTTGAAGTTTTCCTCCAGTTACTCCTAGAACTATCACAATCGGCGTCCTTCTGCAAACTATGGGAGGGTGTTCTAAGCTGTATGGAAAAATGTATGAAGATGAAAATCAAAGGAAGAAGAAGTGAGAATCTTCAAGACCTTGTGCCTGAGCTTCTGAAGTACACTTTGCTTGTTATGAAATCTGGAGACATACTAATGCAGATTAATAATGGTTCGGGAGAAAATAGTTTGTGGGAACTGACATGGCTACATATGAAGAATATTGCTCCCTCATTGCAATCTGAGGTGTTTCCTGAGCAAGATCCGGAACAGCTACAGCACAGACAGGTTAAAGCAATTGAAAGTTTGGGATCTGATGCAAACATTTCTGCTCCTTCAAATGAAAAAGAGGGCAACGAGGGAGTTGAGATCAGTTAA 4395 0.4041 MQMQTGFNAVEDQYELCEAGYPNKTAIACMINAEISAVLAVMRRNVRWGIHYISDDDQSEHYLVRSLKTLRRQIFSWKNQWRAINPALYLQPFLDVIRSDETSAPITGVALSSVYKILTLDVIDKHTVNVGDTMHLVVDSVTSCRFEVTDPGSEEVVLMKILQVLLACVKGKASVMLSNQHVCTIVNTCFRIVHQAGTKGELFQRIARYTMHELVRSIFSHLQNIDNTKCGFINGSATLKQVTNGLNDHALARKKLENERLNSARDAQPLSTITASGAAPVVAANAVDENTAIASSGNETDPHESLLMTDGVPCIVEIFHFLCSLLNVTEHMGVNPRSNTMTFDEDVPLFSLTLINSAIELGGPSFCHHPRLLCLVQDELFFNLMQFGLSMSPLVLSMVCSIVLNLYQHLRQELKLQLEAFFSCVILRLAQSKYGASYQQQEVVMEALVDFCRQKTFMVEMYANFDCDISCSDIFEDIVDLLSKSAFPVNNPLSSMHILSLDGLIAVMQGISERIGSESLSSKQSTVNFEEYTPFWMEKCDSFDDPNDWVPFVCQRKYIKRKLMIGADHFNRDIKKGLEFLQGAHLLPNKPDSQSVACFLRYTAGLDKNSIGDFLGDHDEFYIQVLHEFAKTFDFHDMTLDTALRVFLETFRLPGESQKIHRVLEAFSERYYEQSPDILANKDAALVLSYSIILLNTDHHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSEIYHSICKSEIRTTLEPGFGFPEMTPSRWISLMHEANKTSPYIVSDSRAYLDYDLFVLLSGPTIVAISVAFDNAENKEVYQRCMDGFLVAAKISAHYRLENVLDDLVVCICKFITILDPLSVEDSVLALGDDTKVRIATETVFTIANRYGDYIRTGWRSILDCILIFFKLGLLPPRLASDAADESQVTTEIGHGKSNSYSIVSSNLQYIAPKRSSGLISRFSQLLSLGSEEIQSIPTKEQLVAHQQATQAIQKCHIDSIFTESKFLQAESLLNLERALINVGAQHRKGNRILEDEESLVFCLELLVAITLNNRDRVVLLWKGVYEHISNIIQSTVIPCALVEKAIFGLLRICHRLLPYKENITDELLRSLQLVLKLDALVADAYYEQITREVGCLVKANASHIRSQSGWWTITALLSITSRHLESSEAGFDALLFIMSDGAHLLPANYILCVDAARQFAESRVGQVDRSIIALDLMASSVNSLEKWSNNAKKTVKQQEVEKMLQDIGEMWFRLVQGLGKVSLDQREEVRNHALLCLQKCLKGTVGTHLPRDLWLTCFDQVIFTLLEDLLEIAQSHSQKVYPNIEGTLVIALKLVFEVFLQLLLELSQSASFCKLWEGVLSCMEKCMKMKIKGRRSENLQDLVPELLKYTLLVMKSGDILMQINNGSGENSLWELTWLHMKNIAPSLQSEVFPEQDPEQLQHRQVKAIESLGSDANISAPSNEKEGNEGVEIS 1464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01807 1464 SUPERFAMILY Sec7 domain 556 746 IPR035999 GO:0005085|GO:0032012
Vimu6g01807 1464 FunFam ARF guanine-nucleotide exchange factor GNOM-like 635 753 - -
Vimu6g01807 1464 FunFam ARF guanine-nucleotide exchange factor GNOM 553 635 - -
Vimu6g01807 1464 Pfam Sec7 domain 560 743 IPR000904 GO:0005085|GO:0032012
Vimu6g01807 1464 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 70 1428 - -
Vimu6g01807 1464 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 313 474 IPR032691 -
Vimu6g01807 1464 MobiDBLite consensus disorder prediction 1441 1464 - -
Vimu6g01807 1464 Coils Coil 239 259 - -
Vimu6g01807 1464 CDD Sec7 560 743 IPR000904 GO:0005085|GO:0032012
Vimu6g01807 1464 ProSiteProfiles SEC7 domain profile. 560 741 IPR000904 GO:0005085|GO:0032012
Vimu6g01807 1464 Gene3D - 553 635 - -
Vimu6g01807 1464 Gene3D - 636 750 IPR023394 -
Vimu6g01807 1464 SMART sec7_5 556 743 IPR000904 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01807 Vimu-Chr6 16350361 16355383 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01807 K18443 - gmx:100802024 2411.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01025 1 7470049 7477042 Vimu6g01807 6 16350361 16355383 PCT