Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01794 ATGAATGGCGAGGGGAGTGAAGCAATGCAAGTGGAGAAGGAGATGTTGGTGTACATGTGGGGTTACCTCCCCGGAGCTATGCCGCAGAGGACGCCGCTGCTGACGCCGGTCCTCGTTAGGGTTCCGCCGTCTGGTTACTTTTGGAGTGATGTTTGCGGCGGCGGTTGTGGATTTGCCATGGCTATCTCTGAGCCCGGAAAGCTCATAACATGGGGTTCATCAGATGATTTAGGCCAAAGCTATGTTACATCTGGCAAACATGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGTGACTATAGTAAAAGCTGCAGCTGGATGGGCGCATTGTGTTGCTGTCACTGATTGTGGAGAAGTTTATACATGGGGATGGAGGGAATGTGTTCCCTCTGGGAAGGTGTTTGGTGAATCATTAACTGGGGTGAGCCCTGAAAAGGATGTACCAGGAAGGAAAACCTTATTCCTGACGGAGCAAGGTATATTTGACCTCTTTACAATTTCCATTTCTCCATGGCTACTGTCCCTCTTAGGAGTAAGCCCTCATTCTCAAGGCTCAAAGTCTACTGGAGGAACTGCTTCTAGTACCAGTGGAGAAGAAAGTACAAAGAGAAGAAGAGTGTCTTCATCAAAGCAAACAGCTGAAACCTCTTCTTCCAGTGATGATACCCTGACAGCGTTGCCATGTCTTGTCACACTAAACCCAGGCATAAGGATAGCAAGTGTTGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGTCAGCTTGGTTTGGGTTCTAGAATACGAATGGTGTCCTCTCCTCATCTAGTTCCTTGTATTAATACCTCTTCTTATGGTAAAGATATGCCATTGTCACTGGCTCGAGGAAGCATGAGTTCAGAGGGACAAAATTTCAGAGTACCAGGAACTTATATAAAGGCAATTGCCTGCGGAGGTCGACACAGTGCAGTAATAACAGATGCTGGAGCTGTGCTTACATTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAACTGAGTCCGACTTGTGTATCTTCCTTATTGGGTATTCGAATAGAGGGGGTTGCTGCAGGACTGTGGCACACTGTGTGTACATCTGCTGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGGCAGCTGGGAACTGGCTCTGACCAAGCTGAGACTATACCAAGGCTCCTGGATTGTCCGAGCTTGGAAAATGTCAACGTTAAGAGGATATCTTGTGGGGCGCGCCACTCTGCTCTAATAACAGATACGGGAAAAGTCTTCTGCTGGGGATGGAACAAGTATGGACAGTTGGGCCTCGGGGACGTGATTGACCGTAACATCCCTTCTGAAGTCACCATCGAAGGTTGCTTAGCTAAAAACGTTGCATGTGGCTGGTGGCATACTCTTCTTCTGGCCGAGTCCCCCACCTGA 1488 0.4872 MNGEGSEAMQVEKEMLVYMWGYLPGAMPQRTPLLTPVLVRVPPSGYFWSDVCGGGCGFAMAISEPGKLITWGSSDDLGQSYVTSGKHGETPEPFPLPTEVTIVKAAAGWAHCVAVTDCGEVYTWGWRECVPSGKVFGESLTGVSPEKDVPGRKTLFLTEQGIFDLFTISISPWLLSLLGVSPHSQGSKSTGGTASSTSGEESTKRRRVSSSKQTAETSSSSDDTLTALPCLVTLNPGIRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINTSSYGKDMPLSLARGSMSSEGQNFRVPGTYIKAIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGSDQAETIPRLLDCPSLENVNVKRISCGARHSALITDTGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCLAKNVACGWWHTLLLAESPT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01794 495 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 243 253 IPR000408 -
Vimu6g01794 495 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 389 442 IPR000408 -
Vimu6g01794 495 Gene3D - 210 292 IPR009091 -
Vimu6g01794 495 Gene3D - 293 495 IPR009091 -
Vimu6g01794 495 Gene3D - 11 164 IPR009091 -
Vimu6g01794 495 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 443 493 IPR000408 -
Vimu6g01794 495 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 429 439 IPR000408 -
Vimu6g01794 495 Pfam Regulator of chromosome condensation (RCC1) repeat 337 384 IPR000408 -
Vimu6g01794 495 Pfam Regulator of chromosome condensation (RCC1) repeat 443 490 IPR000408 -
Vimu6g01794 495 Pfam Regulator of chromosome condensation (RCC1) repeat 388 439 IPR000408 -
Vimu6g01794 495 Pfam Regulator of chromosome condensation (RCC1) repeat 240 269 - -
Vimu6g01794 495 PRINTS Chromosome condensation regulator RCC1 signature 102 115 IPR000408 -
Vimu6g01794 495 PRINTS Chromosome condensation regulator RCC1 signature 438 459 IPR000408 -
Vimu6g01794 495 PRINTS Chromosome condensation regulator RCC1 signature 243 259 IPR000408 -
Vimu6g01794 495 PRINTS Chromosome condensation regulator RCC1 signature 378 396 IPR000408 -
Vimu6g01794 495 MobiDBLite consensus disorder prediction 183 223 - -
Vimu6g01794 495 SUPERFAMILY RCC1/BLIP-II 16 493 IPR009091 -
Vimu6g01794 495 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 491 - -
Vimu6g01794 495 MobiDBLite consensus disorder prediction 183 199 - -
Vimu6g01794 495 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 388 IPR000408 -
Vimu6g01794 495 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 118 IPR000408 -
Vimu6g01794 495 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 323 333 IPR000408 -
Vimu6g01794 495 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 257 336 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01794 Vimu-Chr6 16248461 16253852 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01794 - - gmx:100778841 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01794 6 16248461 16253852 Vimu6g01794 6 16248461 16253852 ECH
Vimu6g01794 6 16248461 16253852 Vimu1g01002 1 7257123 7262150 ECH
Vimu6g01794 6 16248461 16253852 Vimu1g01002 1 7257123 7262150 PCT