Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu1g01002 | ATGGGCATGAATAATGGCGAGGGAAGTGAAAGAGGGGCATTGCAGAGGGTGCTTTACATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAGAGGACGCCGCTCTTGACTCCCGTCGCCGTTAGGTTTCCGCCATGTAGTCACTCTTGGAATGATGTTTGCGGCGGTGGTTGTGGATTCGCTATTGCTATCTCTGAATCAGGGAAGCTCATCACGTGGGGCTCGACAGATGATTTAGGCCAAAGCTATGTGACTTCTGGCAAGCACGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACCGAAGCATCTATTGTGAAAGCTGCAGCAGGGTGGGCTCATTGTGTTGCTGTAACAGAACATGGAGAAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCGGGGAGGGTTTTTGGTGAACCATCGACAGGGGTAGGTCTTGAAAAAGATGTGCCAGGAAGTCATAGTCAATTATCAACAGAGCAAGGTATGTTTGACCTCTTTACAACAACAGCTTATGTACAGCTAGCTATCCCTCCCAAGGAGTGGTCTACGCAAGCCAAGAGTTGTTTTGCAATAGTGAGCCCTCGTTCACAAGGCTCAAGATCTACTGGAGGTACTGCCTCCAATAACAGTGGAGAAGAAAGTACAAAGCGAAGGAGAGTATCTGCAACAAAGCAAACAGCTGAAAGCTCATCATCCAGCGATGATAGTCTGACTGCGTTTCCGTGTCTTGTCACACTAAATCCAGGAATAAGGATAGCTAGTGTTGCTGCCGGTGGACGCCATACACTTGCATTGTCAGGACTGGTGTGGGCTTGGGGTTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCAAGAATACGTATGGTATCCTCTCCTCATCTCGTTCCATGTATTGATTCCTCTTATTACGGTAAAGATAGATCTACTACACTGGTTCGAGGAAGCATGGGTTCAGAGGGACAAAGTTTTAGAGTTCCTGGAAGTTACATAAAGAGAATTGCCTGTGGAGGTCGACATAGTGCAGTCATTACAGATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAAGTACCGATGATGAACTAAGCCCAACTTGTGTATCTTCCTTATTGGGTATCCACATAGAGGGGGTTGCTGCAGGACTGTGGCATACAGTCTGTACATCTGCTGATGGTGATGTGTATGCATTTGGTGGTAATCAGTTTGGACAGCTAGGAACTGGTGCCGATCAAGCTGAGACTCTACCAAGACTAGTGGATTCTCCGAGTTTGGAAAATATTCATGCAAAGAATATATCGTGTGGTGCTCGTCACACTGCTTTGCTGGGCCTTGGGGACGTGATTGACCGTAACGTTCCTTCTGAAGTCACCATTGAAGGTTGTGTCCCTAAAAATGTTGCTTGTGGTTGGTGGCATACTCTTCTTCTGGCCGAGTCCCCCACCTGA | 1470 | 0.4823 | MGMNNGEGSERGALQRVLYMWGYLPGALPQRTPLLTPVAVRFPPCSHSWNDVCGGGCGFAIAISESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEASIVKAAAGWAHCVAVTEHGEVYTWGWKECIPSGRVFGEPSTGVGLEKDVPGSHSQLSTEQGMFDLFTTTAYVQLAIPPKEWSTQAKSCFAIVSPRSQGSRSTGGTASNNSGEESTKRRRVSATKQTAESSSSSDDSLTAFPCLVTLNPGIRIASVAAGGRHTLALSGLVWAWGYGGEGQLGLGSRIRMVSSPHLVPCIDSSYYGKDRSTTLVRGSMGSEGQSFRVPGSYIKRIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIHIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAETLPRLVDSPSLENIHAKNISCGARHTALLGLGDVIDRNVPSEVTIEGCVPKNVACGWWHTLLLAESPT | 489 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu1g01002 | 489 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 58 | 485 | - | - | |
| Vimu1g01002 | 489 | MobiDBLite | consensus disorder prediction | 195 | 212 | - | - | |
| Vimu1g01002 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 348 | 399 | IPR000408 | - | |
| Vimu1g01002 | 489 | SUPERFAMILY | RCC1/BLIP-II | 19 | 487 | IPR009091 | - | |
| Vimu1g01002 | 489 | Gene3D | - | 199 | 302 | IPR009091 | - | |
| Vimu1g01002 | 489 | Gene3D | - | 303 | 489 | IPR009091 | - | |
| Vimu1g01002 | 489 | MobiDBLite | consensus disorder prediction | 195 | 237 | - | - | |
| Vimu1g01002 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 67 | 119 | IPR000408 | - | |
| Vimu1g01002 | 489 | Gene3D | - | 9 | 139 | IPR009091 | - | |
| Vimu1g01002 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 400 | 453 | IPR000408 | - | |
| Vimu1g01002 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 337 | 355 | IPR000408 | - | |
| Vimu1g01002 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 103 | 116 | IPR000408 | - | |
| Vimu1g01002 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 122 | 138 | IPR000408 | - | |
| Vimu1g01002 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 395 | 416 | IPR000408 | - | |
| Vimu1g01002 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 103 | 127 | - | - | |
| Vimu1g01002 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 268 | 347 | IPR000408 | - | |
| Vimu1g01002 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 267 | 344 | IPR000408 | - | |
| Vimu1g01002 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 348 | 395 | IPR000408 | - | |
| Vimu1g01002 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 399 | 450 | IPR000408 | - | |
| Vimu1g01002 | 489 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 334 | 344 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu1g01002 | Vimu-Chr1 | 7257123 | 7262150 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu1g01002 | - | - | gmx:100807837 | 827.009 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu6g01794 | 6 | 16248461 | 16253852 | Vimu1g01002 | 1 | 7257123 | 7262150 | ECH | |
| Vimu1g01002 | 1 | 7257123 | 7262150 | Vimu1g01002 | 1 | 7257123 | 7262150 | ECH | |
| Vimu6g01794 | 6 | 16248461 | 16253852 | Vimu1g01002 | 1 | 7257123 | 7262150 | PCT |