Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01790 AGACTCTCTTTCTTCTCTGCCAACCGCACTGAACAAGAACAACAGTTTGCTGGTCAGAATATGGAGAACGCAGATCCTTATAGACATTTTCTCAAAGATGTTAAGCGCATCATCATCAAGGTTGGGACTGCTGTGGTTACTCGCCAAGATGGAAGGTTGGCGGTTGGAAAATTAGGGGCACTCTGTGAGCAGATTAAGGAGCTGAACTCTCTTGGTTATGAGATTATTTTGGTGTCATCAGGTGCTGTTGGCCTTGGTCGCCAAAGGCTTAGATACAGAAAATTAATTAACAGCAGCTTTGCTGACCTTCAGAAGCCGCAAATTGAACTTGATGGCAAGGCTTGTGCTGCTGTTGGACAGAACAGCCTTATGGCTCTTTATGATGCTTTGTTTAGTCAGCTAGATGTGACATCTGCCCAGCTTCTTGTGACAGACAATGATTTTCGAGACAAAGATTTCAGAAAGCAACTCAGCGAAACTGTGAAATCATTGTTAGGATTAAAAGTTATTCCCATATTCAACGAGAACGATGCAGTTAGTACTAGGAAAGCTCCATATGAGGATTCTTCTGGCATATTTTGGGATAATGACAGTTTATCAGCTTTATTGGCACTGGAATTAAAAGCTGATCTTCTAATTTTGTTGAGTGACGTAGAGGGTCTTTATAGTGGTCCTCCAAGTGACCCACGTTCAAAGCTTATTCATACATACATTAAAGAGAAACATCAAAATGAAATTACTTTTGGAGACAAGTCTAGAGTGGGAAGAGGTGGTATGACTGCCAAAGTAAAGGCTTCTATTCATGCAGCTGAAGCTGGCATTCCTGTTATCATTACCAGCGGTTATGCAGCAGAAAATATCCTTAAAGTTCTCCAAGGACAACTTATTGGAACCCTCTTTCATAAAGATGCCAATAAATGGGCCCCAATAAAAGAGTTTAATGCTCGGGATATGGCAGTTGCAGCTAGGGACTGTTCCAGAAGGCTTCAGGCTATGTCTTCAGAAGAGAGGAAACAAATTTTACTAAAAATAGCCGATGCTTTGGAAGCACATCAAGAAGAGATCAGGATTGAAAACGAAGCTGATGTTGCTGCTGCACAAGAAGAAGGACGTGAAAAATCCTTGGTGGCTAGGCTGCTTGCAACCCTTGCAAACAATGTTCGACTTATTGCAAACATGGAAGATCCCATTGGTCGAGTGCTTAAACGAACTGAGCTGGCAGAAGGGCTGATTTTGGAGAAAACATCATCACCTTTAGGTGTTCTTTTAATTGTTTTTGAGTCTCGCCCTGATGCACTAGTGCAGATAGCTTCTTTGGCAATCCGAAGTGGGAATGGACTTCTCTTGAAAGGAGGCAAGGAGGCTAAGAGATCAAATGCAATTTTGCACAAAGTCATTACTGAAGCCATACCAGATTCTGTCGGTGCAAAACTTATTGGACTTGTGACATCAAGAGCAGAAATTCCTGAGTTACTTAAGTTGGATGATGTAATTGATCTGGTGATTCCAAGAGGCAGTAACCAACTTGTCTCTCAGATTAAGAGTTCCACTAAAATTCCTGTTTTGGGTCATGCTGATGGAATTTGTCATGTCTATGTTGATAAATCTGCTGATTTGGAGATGGCAAAGAGGATTGTACTGGATGCAAAAATAGATTATCCAGCAGGCTGCAATGCCATGGAAACACTTCTTGTTCACAAGGACTTAGTAGAGAAAGGTTGGCTCAATAATATTACTGTTGACCTACGGACAGAAGGTGTTACATTATTTGGAGGACCAAAGGCAAGTCCTTTGTTAAATATTCCTCTGGTTCGTTCGTTACATCATGAGTACAACTCGTTGACATGCACAATTGAAATTGTGGATGATGTTTATGCAGCTATTGATCATATAAATCTTTATGGAAGGCACGGTTCTCTTTATTTTGCACATACTGATTCCATTGTTACAGAAGATCATGAAGTAGCTGATGTGTTTCTACGCCAAGTTGACAGGCAATTTTGA 2004 0.4102 RLSFFSANRTEQEQQFAGQNMENADPYRHFLKDVKRIIIKVGTAVVTRQDGRLAVGKLGALCEQIKELNSLGYEIILVSSGAVGLGRQRLRYRKLINSSFADLQKPQIELDGKACAAVGQNSLMALYDALFSQLDVTSAQLLVTDNDFRDKDFRKQLSETVKSLLGLKVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLSALLALELKADLLILLSDVEGLYSGPPSDPRSKLIHTYIKEKHQNEITFGDKSRVGRGGMTAKVKASIHAAEAGIPVIITSGYAAENILKVLQGQLIGTLFHKDANKWAPIKEFNARDMAVAARDCSRRLQAMSSEERKQILLKIADALEAHQEEIRIENEADVAAAQEEGREKSLVARLLATLANNVRLIANMEDPIGRVLKRTELAEGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVITEAIPDSVGAKLIGLVTSRAEIPELLKLDDVIDLVIPRGSNQLVSQIKSSTKIPVLGHADGICHVYVDKSADLEMAKRIVLDAKIDYPAGCNAMETLLVHKDLVEKGWLNNITVDLRTEGVTLFGGPKASPLLNIPLVRSLHHEYNSLTCTIEIVDDVYAAIDHINLYGRHGSLYFAHTDSIVTEDHEVADVFLRQVDRQF 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01790 667 NCBIfam glutamate 5-kinase 35 306 IPR005715 GO:0005737|GO:0006561
Vimu6g01790 667 ProSitePatterns Glutamate 5-kinase signature. 252 269 IPR019797 GO:0004349|GO:0006561
Vimu6g01790 667 PIRSF P5C_synthetase 2 666 IPR005766 GO:0003824|GO:0006561
Vimu6g01790 667 Pfam Amino acid kinase family 35 280 IPR001048 -
Vimu6g01790 667 Hamap Glutamate 5-kinase [proB]. 35 304 IPR005715 GO:0005737|GO:0006561
Vimu6g01790 667 SUPERFAMILY Carbamate kinase-like 35 300 IPR036393 -
Vimu6g01790 667 NCBIfam delta l-pyrroline-5-carboxylate synthetase 28 664 IPR005766 GO:0003824|GO:0006561
Vimu6g01790 667 NCBIfam glutamate-5-semialdehyde dehydrogenase 322 665 IPR000965 GO:0004350|GO:0006561
Vimu6g01790 667 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 532 667 IPR016163 GO:0016620
Vimu6g01790 667 FunFam Delta-1-pyrroline-5-carboxylate synthase 526 666 - -
Vimu6g01790 667 CDD ALDH_F18-19_ProA-GPR 316 664 IPR000965 GO:0004350|GO:0006561
Vimu6g01790 667 FunFam Delta-1-pyrroline-5-carboxylate synthase 24 307 - -
Vimu6g01790 667 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 315 531 IPR016162 GO:0016491
Vimu6g01790 667 CDD AAK_P5CS_ProBA 27 301 IPR041744 -
Vimu6g01790 667 SUPERFAMILY ALDH-like 316 664 IPR016161 GO:0016491
Vimu6g01790 667 Pfam Aldehyde dehydrogenase family 314 572 IPR015590 GO:0016491
Vimu6g01790 667 Gene3D - 24 308 IPR036393 -
Vimu6g01790 667 PANTHER GLUTAMATE SEMIALDEHYDE DEHYDROGENASE 22 665 - -
Vimu6g01790 667 PRINTS Glutamate 5-kinase family signature 156 177 IPR001057 GO:0005524|GO:0016301
Vimu6g01790 667 PRINTS Glutamate 5-kinase family signature 195 222 IPR001057 GO:0005524|GO:0016301
Vimu6g01790 667 PRINTS Glutamate 5-kinase family signature 254 274 IPR001057 GO:0005524|GO:0016301
Vimu6g01790 667 PRINTS Glutamate 5-kinase family signature 72 86 IPR001057 GO:0005524|GO:0016301
Vimu6g01790 667 PRINTS Glutamate 5-kinase family signature 116 144 IPR001057 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01790 Vimu-Chr6 16223511 16228584 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01790 K12657 - gmx:548058 1125.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01790 6 16223511 16228584 Vimu6g01790 6 16223511 16228584 ECH
Vimu6g01790 6 16223511 16228584 Vimu1g00998 1 7234960 7243125 ECH
Vimu6g01790 6 16223511 16228584 Vimu1g00998 1 7234960 7243125 PCT