Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00998 ATGGAGAGCGCGGTGGATCGTTCTCGGGGGTTCATGAAGGACGTGAAGCGTGTCATCATCAAAGTTGGCACCGCGGTGGTCACTCGCGAAGAAGGAAGGTTAGCGGTTGGAAGATTGGGAGCTCTGTGCGAGCAGATTAAGCAACTCAACTCTCTCGGATACGACATTATACTCGTCTCCTCTGGCGCCGTCGGTATTGGCCGCCAAAGGCTACATTTCCGTAAATTAATCAACAGCAGCTTCGCCGACCTTCAGAAACCCCAACTCGAACTCGACGGCAAGGCCTGCGCCGCCGTTGGACAGAACAGTCTCATGGCTCTCTACGATACGCTGTTCACTCAGCTCGATGTGACATCGGCTCAGCTTCTTGTGACGGATAACGATTTTCGAGATAAGGATTTCAGGAAGCAGCTTACTGAGACTGTGAAGTCGCTGTTGGCGCTGAAGGTTATTCCGGTGTTCAATGAGAACGATGCCGTTAGTACCAGGAAGGCTCCCTATGAGGATTCTTCTGGTATATTTTGGGATAATGATAGTTTATCCGCTTTATTAGCCTTGGAGTTAAAAGCCGATCTCCTTGTTTTGTTGAGTGATGTAGAAGGTCTTTACAGTGGCCCTCCAAGTGACCCTCATTCAAAGCTTATTTATACATATAACAAAGAAAAACATCAGAATGAAATTACTTTTGGCGACAAATCTAGAGTGGGAAGAGGCGGAATGACTGCCAAAGTAAAAGCTGCGGTTCATGCAGCTGAAGCTGGCATTCCTGTTGTTATTACCAGTGGTTTTGCACCTGAGAATATCATTAATGTTCTCCAAGGACAACGTATAGGAACTCTCTTCCATAAAGATGCACATGAGTGGGCTCAGGTAAAAGAGGTTGATGCACGTGAGATGGCTGTTGCAGCCAGGGAATGTTCCAGAAGGCTCCAGGCCTTATCTTCAGAGGAAAGGAAACAAATTTTACTTAAAATAGCTGATGCCCTGGAAGCAAATGAAAAAATAATCAGGATTGAAAATGAAGCTGATGTTACTGCTGCACAAGAAGCAGGATATGAAAAATCCTTGATTGCAAGTCTTGCAAACAACATGCGAATCATTGCCAATATGGAAGATCCAATTGGTCGAGTATTAAAACGTACTGAGCTTTCAAATGGGCTAATTTTAGAAAAGACATCATCTCCTTTGGGAGTGCTCCTTATTGTTTTTGAGTCACGTCCTGATGCTCTTGTACAGATAGCTTCATTGGCAATCCGAAGTGGGAATGGGCTTCTCTTGAAAGGTGGCAAAGAAGCTAAGCGATCAAATGCAATTTTGCACAAAGTAATTATTGAGGCCATACCGGATAATGTTGGTGGAAAACTTATAGGACTTGTGACCTCAAGGGAAGAAATCCCTGAGCTACTTAAGCTGGATGATGTAATTGATCTGGTAATTCCAAGAGGCAGTAACAAACTTGTTTCTCAGATCAAGAGTTCAACTAAAATTCCTGTTTTAGGTCATGCTGATGGAATTTGCCATGTCTATGTTGATAAGTCTGCCAATGTGGAGATGGCAAAGCGGATTGTATTAGATGCAAAAGTTGATTATCCGGCAGCCTGCAATGCCATGGAAACACTTCTTATCCACAAGGATTTGATAGAGAAAGGTTGGCTTAATGAGATCATTCTTGACCTTCGAACTGAAGGCGTTATATTATATGGTGGCCCTGTGGCAAGTTCTCTGTTAAATATTCCACAAGCACATTCATTTCATCATGAGTACAGTTCGCTGGCTTGCACCGTCGAAATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTGCACATACTGATTCGATCGTTGCTGAAGATAACGAAGTAGCTAATGTGTTTCTACGCCAAGTAGACAGTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCACGATTTGGACTAGGCGCAGAGGTTGGAATTAGTACAAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGGGATTGTTAACAACAAGATGGATACTAAAAGGAAGGGGACAAGTGGTGGATGGTGATAGAGGCGTTGTCTACACCCACAAAGACCTTGCAATTTAA 2112 0.4394 MESAVDRSRGFMKDVKRVIIKVGTAVVTREEGRLAVGRLGALCEQIKQLNSLGYDIILVSSGAVGIGRQRLHFRKLINSSFADLQKPQLELDGKACAAVGQNSLMALYDTLFTQLDVTSAQLLVTDNDFRDKDFRKQLTETVKSLLALKVIPVFNENDAVSTRKAPYEDSSGIFWDNDSLSALLALELKADLLVLLSDVEGLYSGPPSDPHSKLIYTYNKEKHQNEITFGDKSRVGRGGMTAKVKAAVHAAEAGIPVVITSGFAPENIINVLQGQRIGTLFHKDAHEWAQVKEVDAREMAVAARECSRRLQALSSEERKQILLKIADALEANEKIIRIENEADVTAAQEAGYEKSLIASLANNMRIIANMEDPIGRVLKRTELSNGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVIIEAIPDNVGGKLIGLVTSREEIPELLKLDDVIDLVIPRGSNKLVSQIKSSTKIPVLGHADGICHVYVDKSANVEMAKRIVLDAKVDYPAACNAMETLLIHKDLIEKGWLNEIILDLRTEGVILYGGPVASSLLNIPQAHSFHHEYSSLACTVEIVDDVYAAIDHINLAHTDSIVAEDNEVANVFLRQVDSAAVFHNASTRFSDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGRGQVVDGDRGVVYTHKDLAI 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00998 703 ProSitePatterns Glutamate 5-kinase signature. 233 250 IPR019797 GO:0004349|GO:0006561
Vimu1g00998 703 PIRSF P5C_synthetase 1 703 IPR005766 GO:0003824|GO:0006561
Vimu1g00998 703 Hamap Glutamate 5-kinase [proB]. 16 285 IPR005715 GO:0005737|GO:0006561
Vimu1g00998 703 SUPERFAMILY Carbamate kinase-like 16 281 IPR036393 -
Vimu1g00998 703 CDD ALDH_F18-19_ProA-GPR 297 683 IPR000965 GO:0004350|GO:0006561
Vimu1g00998 703 Hamap Gamma-glutamyl phosphate reductase [proA]. 295 688 IPR000965 GO:0004350|GO:0006561
Vimu1g00998 703 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 503 646 IPR016163 GO:0016620
Vimu1g00998 703 PRINTS Glutamate 5-kinase family signature 97 125 IPR001057 GO:0005524|GO:0016301
Vimu1g00998 703 PRINTS Glutamate 5-kinase family signature 53 67 IPR001057 GO:0005524|GO:0016301
Vimu1g00998 703 PRINTS Glutamate 5-kinase family signature 235 255 IPR001057 GO:0005524|GO:0016301
Vimu1g00998 703 PRINTS Glutamate 5-kinase family signature 137 158 IPR001057 GO:0005524|GO:0016301
Vimu1g00998 703 PRINTS Glutamate 5-kinase family signature 176 203 IPR001057 GO:0005524|GO:0016301
Vimu1g00998 703 Gene3D - 5 290 IPR036393 -
Vimu1g00998 703 Pfam Amino acid kinase family 16 261 IPR001048 -
Vimu1g00998 703 NCBIfam delta l-pyrroline-5-carboxylate synthetase 9 703 IPR005766 GO:0003824|GO:0006561
Vimu1g00998 703 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 304 686 IPR016162 GO:0016491
Vimu1g00998 703 FunFam Delta-1-pyrroline-5-carboxylate synthase 5 288 - -
Vimu1g00998 703 PANTHER GLUTAMATE SEMIALDEHYDE DEHYDROGENASE 5 702 - -
Vimu1g00998 703 NCBIfam glutamate 5-kinase 16 290 IPR005715 GO:0005737|GO:0006561
Vimu1g00998 703 SUPERFAMILY ALDH-like 295 687 IPR016161 GO:0016491
Vimu1g00998 703 Pfam Aldehyde dehydrogenase family 287 549 IPR015590 GO:0016491
Vimu1g00998 703 FunFam Delta-1-pyrroline-5-carboxylate synthase 503 646 - -
Vimu1g00998 703 NCBIfam glutamate-5-semialdehyde dehydrogenase 303 677 IPR000965 GO:0004350|GO:0006561
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00998 Vimu-Chr1 7234960 7243125 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00998 K12657 - gmx:100816150 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01790 6 16223511 16228584 Vimu1g00998 1 7234960 7243125 ECH
Vimu1g00998 1 7234960 7243125 Vimu1g00998 1 7234960 7243125 ECH
Vimu6g01790 6 16223511 16228584 Vimu1g00998 1 7234960 7243125 PCT