Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01780 ATGGATGTTTTTTCCGACAAGAACCAAACTTCTCAAAATAAAACAGATGGGGTTTCCTCTTGTCTCACCGATTCCACTGCAGACTCCAAGGAAACCAGTTTCTGTGCATCCACTTCTTCAGTTACCGTTGAAGAAGAAAAGGCAAAAGGCTATTCTTCACCCGCTCCTCTTGGTTGGCCCATTCTCAAGGCTACACTCTCCAAGCGCTCTAATTCTCATGAAAAAGAAAACGAACATAAATCTCACTTGGAAGACACTAAGCTTACTCGTATTGGTTTGAAGCTGTCAGAAGTTGACATGATGAAGGAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGTAAAGGGGTTTGCACTGCTTTGGCCATCTCCAATGCCATTACTAATCTGTGTGCAACTGTATTTGGGCAATTATGGAGACTAGAACCTTTACCTTCTGAGAAGAAAGAAATGTGGCAGAGAGAGGTGGAGTGGCTTGTTAGTGTTAGTGATTACATTGTTGAGTTGATGCCTTCTTGGCAAACATTTCCTGATGGGAGCAAACTCGAGGTAATGACTTGCAGGCCTAGGACAGATATTTTTATCAACCTTCCAGCTCTTCGCAAACTTGACAACATGCTTCTCGAAATTTTAGATAGTTTCACTTCTACAGAGTTCTGGTATGTAGACCAAGGCATTGTAGCCGCAGATGCAGATGGTTCAGCCTCTTTTCGCAAAACAATTCAGCGGCAAGAAGAGAAGTGGTGGCTTCCCGTACCTCGTGTCCCTCCTGCAGGACTCAGTGAAGACTCAAGAAAACAGTTGAATCACTCTCGAGAATGTGCAAACCAAATACTAAAAGCAGCCATGGCTATCAACAACATTGCTTTGGCTGACATGGAAGTTCCTGAGTCATATTTGGAAGTTCTTCCTAAGAATGGAAGAACTTGCTTGGGGGATTTTATTTACCGTTACATAACATCAGATCAATTCTCCCAAGAGTACCTTCTTGATTGCTTAGACATATCCTCTGAACATGTTGCATTAGAGATTGCAAACCGTGTGGAAGCAGCGATTTATGTATGGCGCCGAAGAGTTCACACTCGGTTCTTACCATCCCCAAAGCCCAACCGTTCTACCCCAAAATCATCATGGGAAATAGTCAAGGACTTCATGGTTGATGGAGATAAGAGAGAATTGCTAGCAGATAGAGCTGAAAGCATTCTAGTTTCCCTGAAGCAGCGGTTCCCAGGCTTAAGCCAAACCACCCTTGATACCAGCAAGATCCAGTGCAATAAGGATGTGGGGAAATCCGTGCTAGAGAGCTACTCAAGAGTTTTGGAGAGCATGGCATTTAACATTGTAGCTCGCATTGATGATTTGCTATATGTGGATGACTTGACCAAACAGTCAGAGAGGTTTGCATTAGTTCCTACTACTACTACTACTACTACAGTTAAGGTGGTTTCTCAGCAGAAGAAGGTTACGCGTCCACATTCGGTGTCTGTCTCAGGCACTGTTACTCCTCACAAAGCAGCATTTAGCAGACCAAACTTTTCACCGGCTCCTGTGCCACTCATTAGTCCTGCAAGAGGGGAGAGAACTCCTTTCCTTCATAACAACAATAGCATCAAACCTCATCGTCGTGGCTTTGCGGTGAGGAGAGTGCTGTCAAATTATCTTGGAGTAGAGACCAAGACCACTAAGATATGCAGCAACTCAACTGAGGTGAAATGTTCAAACCCAAGTAGCAAGAAAACTGAACAACAACGTGAGAAGAAACCATGCACACTCAAAAACAAAACCAAATGA 1803 0.4365 MDVFSDKNQTSQNKTDGVSSCLTDSTADSKETSFCASTSSVTVEEEKAKGYSSPAPLGWPILKATLSKRSNSHEKENEHKSHLEDTKLTRIGLKLSEVDMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATVFGQLWRLEPLPSEKKEMWQREVEWLVSVSDYIVELMPSWQTFPDGSKLEVMTCRPRTDIFINLPALRKLDNMLLEILDSFTSTEFWYVDQGIVAADADGSASFRKTIQRQEEKWWLPVPRVPPAGLSEDSRKQLNHSRECANQILKAAMAINNIALADMEVPESYLEVLPKNGRTCLGDFIYRYITSDQFSQEYLLDCLDISSEHVALEIANRVEAAIYVWRRRVHTRFLPSPKPNRSTPKSSWEIVKDFMVDGDKRELLADRAESILVSLKQRFPGLSQTTLDTSKIQCNKDVGKSVLESYSRVLESMAFNIVARIDDLLYVDDLTKQSERFALVPTTTTTTTVKVVSQQKKVTRPHSVSVSGTVTPHKAAFSRPNFSPAPVPLISPARGERTPFLHNNNSIKPHRRGFAVRRVLSNYLGVETKTTKICSNSTEVKCSNPSSKKTEQQREKKPCTLKNKTK 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01780 600 FunFam Rop guanine nucleotide exchange factor 14 330 471 - -
Vimu6g01780 600 MobiDBLite consensus disorder prediction 1 36 - -
Vimu6g01780 600 MobiDBLite consensus disorder prediction 582 600 - -
Vimu6g01780 600 FunFam Rop guanine nucleotide exchange factor 1 89 329 - -
Vimu6g01780 600 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 96 466 IPR005512 GO:0005085
Vimu6g01780 600 Gene3D PRONE domain, subdomain 1 331 472 - -
Vimu6g01780 600 Gene3D PRONE domain, subdomain 1 92 330 - -
Vimu6g01780 600 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 21 536 IPR038937 GO:0005085
Vimu6g01780 600 ProSiteProfiles PRONE domain profile. 88 472 IPR005512 GO:0005085
Vimu6g01780 600 MobiDBLite consensus disorder prediction 572 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01780 Vimu-Chr6 16136533 16139519 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01780 - - gmx:100796692 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01780 6 16136533 16139519 Vimu6g01780 6 16136533 16139519 ECH
Vimu6g01780 6 16136533 16139519 Vimu1g00964 1 6898351 6901057 ECH
Vimu6g01780 6 16136533 16139519 Vimu1g00964 1 6898351 6901057 PCT