Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00964 ATGGAGGCTTTATGCAACAGGGATGAAAATTTTCAGAAAAAAAAAGACGGGCTTCCTTCTTCTGCCACTGATTCAACTCAAGAACTCAAAGGATGTGCTTCTCCCCCTCTTGGTTGGCCTATTCGGAAGGCTACATTCTCCAAATGCCGCAAATCAGATGAGAAAGAAAATGAACCTTTTACTCACTTGGAAGATACGAAATTTACCAGTATCAGTTCAAAAATGCCTGGAATCGATGCAATGAAGGAAAGGTTTGCAAAATTACTGCTTGGGGAAGATATGTCAGGATCTGGGAAAGGAGTCTGCAGTGCTTTGGCTATCTCAAATGCCATTACAAATCTGTGTGCCACTGTATTTGGGCAATTATGGAGACTAGAACCTGTTCCATGTGAAAAGAAAGAAATGTGGCGGAGGGAGATGGAATGGCTTGTAAGTGTTAGTGATCACATTGTTGAGTTAATACCTTCTTGGCAGACATTTCCGGATGGAAGTAAGCTAGAGGTAATGACTTGCAGACCAAGGTCAGATCTTTTTATGAATCTTCCAGCTCTGCGCAAACTCGACAACATGCTTCTTGAAATTTTAGATGGTTGCAAAGATATGGAATTTTGGTATGTTGACCAAGGAATTGTAGCCCAAGATGCAGAGGGTTCAGCTTCATTTTGCAAAAGAATTCAGAGACAAGAGGATAAATGGTGGCTCCCTGTACCTCGTGTGCCCCCTGCTGGCCTCAGTGAGAACTCGAGAAAGCAGTTGAATCACACAAGAGAATGTGCAAGCCAAATTCTAAAAGCTGCCATGGCTATCAACAATGGTGCTTTAGCTGAAATGGAAGTTCCTGAGTCATACTTGGAAACTCTTCCCAAGAATGGAAGAACTTGCTTGGGGGATTTTGTTTACCATTACATTACATCAGAGAAATTCTCTCCAGAGTGTTTGCTGGATTGCCTAGACCTCTCCTCGGAGCATGTGGCACTAGAGATTGCAAACCGTGTGGAAGCCTCAATATATGTGTGGCGTAGAAGAGCTCACTCTAAACCCCCACCTAATCCTAACCGTTCAACTACAAAGTCATCGTGGGAAATTGTGAAGGACTTCATGGCTGATGGAGACAAGAGAGAACTACTAGCAGAAAGAGCTGAAAATGTTCTACTTTCATTGAAGCATAAGTATCCTGGTCTAACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAGGATGTTGGAAAATCCATACTTGAGAGCTATTCAAGAGTTTTGGAGAGCATGGCATTTAACATTGTAGCTCGCATAGACGATTTGCTATATGTGGATGACTTGACTAAACATTCAGATAGGTTTCCATTGGTTCCATTGGCAGTGTCTGTCTCAGGCACTCCTCACAAAGCAGTTGGCACGCCAAGCTTTTCACCTGCTCCATCACTCATTAGTCCTGCAAGGGGAGAGAGATCTCCTTTCCTCAACAACAACATTAACAATAACAACAACAACAATATTAAACCTCAACGTCGTGGCTTTGGGGTGAGAAGAGTATTGTCGAATTATCTTGGTGCAGAATCAAAAGAAACAAAGAATTTTAGCAGTTCAACTGTTGTGGTGAATGGTTCTAATTCTAACCCAAGCTGCAATAAAACAGAACAGGCAGAACATCACAAGAAGCCACATGCCATGAATGGCAAGACAAAATGA 1695 0.4242 MEALCNRDENFQKKKDGLPSSATDSTQELKGCASPPLGWPIRKATFSKCRKSDEKENEPFTHLEDTKFTSISSKMPGIDAMKERFAKLLLGEDMSGSGKGVCSALAISNAITNLCATVFGQLWRLEPVPCEKKEMWRREMEWLVSVSDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFMNLPALRKLDNMLLEILDGCKDMEFWYVDQGIVAQDAEGSASFCKRIQRQEDKWWLPVPRVPPAGLSENSRKQLNHTRECASQILKAAMAINNGALAEMEVPESYLETLPKNGRTCLGDFVYHYITSEKFSPECLLDCLDLSSEHVALEIANRVEASIYVWRRRAHSKPPPNPNRSTTKSSWEIVKDFMADGDKRELLAERAENVLLSLKHKYPGLTQTTLDTSKIQCNKDVGKSILESYSRVLESMAFNIVARIDDLLYVDDLTKHSDRFPLVPLAVSVSGTPHKAVGTPSFSPAPSLISPARGERSPFLNNNINNNNNNNIKPQRRGFGVRRVLSNYLGAESKETKNFSSSTVVVNGSNSNPSCNKTEQAEHHKKPHAMNGKTK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00964 564 MobiDBLite consensus disorder prediction 528 564 - -
Vimu1g00964 564 MobiDBLite consensus disorder prediction 1 15 - -
Vimu1g00964 564 MobiDBLite consensus disorder prediction 1 36 - -
Vimu1g00964 564 ProSiteProfiles PRONE domain profile. 68 450 IPR005512 GO:0005085
Vimu1g00964 564 MobiDBLite consensus disorder prediction 16 30 - -
Vimu1g00964 564 Gene3D PRONE domain, subdomain 1 308 449 - -
Vimu1g00964 564 Gene3D PRONE domain, subdomain 1 71 307 - -
Vimu1g00964 564 FunFam Rop guanine nucleotide exchange factor 7 278 406 - -
Vimu1g00964 564 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 78 444 IPR005512 GO:0005085
Vimu1g00964 564 FunFam Rop guanine nucleotide exchange factor 14 310 449 - -
Vimu1g00964 564 FunFam Rop guanine nucleotide exchange factor 1 69 309 - -
Vimu1g00964 564 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 24 494 IPR038937 GO:0005085
Vimu1g00964 564 MobiDBLite consensus disorder prediction 528 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00964 Vimu-Chr1 6898351 6901057 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00964 - - gmx:100814278 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01780 6 16136533 16139519 Vimu1g00964 1 6898351 6901057 ECH
Vimu1g00964 1 6898351 6901057 Vimu1g00964 1 6898351 6901057 ECH
Vimu6g01780 6 16136533 16139519 Vimu1g00964 1 6898351 6901057 PCT