Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01768 ATGAATGAGTACCGAATAAGAGCCCTTCAAGCTTACCCAGATCCCTGGACTCGCTTCTTCAATGGCTCAAATTGCTCTTATTGCTCCACCAACTTTCATAGCCATCACCACCGGCATGTACCACTTTCCATGCTATCGAATTCACCATCCAACCTCCGATCTCTTTTTTTTCCTAATTTATTTTGTGTTCTCCTAGGTAGAGGAAAACATCACCTGCATGAACTCTCGTATGCAAGAAAGAAACTGAGTTTACCATTACTTGTTGGGAGTAGGAAGATGGAGAAAAGTCCATTGTTTGTTTCTTCAAATTCCGGTGATGAAAAAAGGAGTAGAAGTGTGGCGGTCAAAGTTTCAGAAGGAGGAGCCATCTCTCTCCCTCATGGTTGGCCACCACAAAACAAGATTTCTAATTCCGACCCAGACCTACCACTATTCTTAATTTCTCCGACCCCAAGCCATGGATTCCCAGATCCATGGCTTGTAAAGTCAACCCCTTTATCATTGTCTTCGTTGTCCCCACTCAAAGCTGAACTCTTCTTCAATGCCCAGATCCCCATTAATCTTTCTCTGAAACCGCAGGGTTCTGAAGATCAAATCGAAGGCATAAACAGAATGAAGAGTTCCAACCGCTTCTTCACTGTAGCGCTGGTGGCGGCGTGGTACTCCTCCAACATTGGGGTGCTTCTCTTGAATAAGTATTTGCTCAGCAACTATGGGTTCAAGTACCCGATCTTCCTCACCATGTGCCACATGACCGCGTGTTCCTTGCTCAGTTACGTGGCTATCGCGTGGATGAAGCTAGTGCCGTTGCAAACCATTCGATCCAGGGTTCAGTTCTTCAAGATCTCTGCTCTCAGTCTAGTTTTCTGTGTCTCCGTTGTGTTTGGGAACATTTCTCTGCGCTACCTCCCCGTATCGTTTAACCAGGCTATTGGCGCCACCACGCCCTTCTTCACTGCCGTTTTTGCTTACCTTATGACCTTCAAGAGGGAGGCTTGGCTCACTTACCTCGCCCTTGTTCCTGTTGTTACTGGAGTCATCATTGCCAGTGGGGGGGAACCTAGTTTCCATCTGTTTGGGTTTATTATATGTGTTGCGGCTACGGGTGCAAGGGCTCTGAAATCAGTGCTGCAAGGGATTTTGCTTTCTTCTGAAGGAGAGAAGCTGAATTCTATGAACCTTTTGCTTTACATGGCTCCAATGGCTGTGGTTTTCCTTCTTCCTGCAACGCTTATAATGGAAGAGAATGTGGTTGGCATCACGTTGGCTCTTGCTAGAGATGATTCCAAAATCATTTGGTATCTGCTGTTTAATTCGGCTCTTGCATATTTTGTCAACCTGACCAACTTTTTGGTCACGAAACATACAAGTGCTCTGACCCTTCAGGTTCTAGGAAATGCTAAAGGTGCTGTAGCAGTAGTAGTTTCAATTCTAATATTCAGAAACCCAGTTTCGGTCACTGGAATGATGGGTTACTCACTCACAGTGTTTGGAGTTATACTCTATAGTGAAGCCAAAAAGCGAAGCAAGTGA 1533 0.454 MNEYRIRALQAYPDPWTRFFNGSNCSYCSTNFHSHHHRHVPLSMLSNSPSNLRSLFFPNLFCVLLGRGKHHLHELSYARKKLSLPLLVGSRKMEKSPLFVSSNSGDEKRSRSVAVKVSEGGAISLPHGWPPQNKISNSDPDLPLFLISPTPSHGFPDPWLVKSTPLSLSSLSPLKAELFFNAQIPINLSLKPQGSEDQIEGINRMKSSNRFFTVALVAAWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLLSYVAIAWMKLVPLQTIRSRVQFFKISALSLVFCVSVVFGNISLRYLPVSFNQAIGATTPFFTAVFAYLMTFKREAWLTYLALVPVVTGVIIASGGEPSFHLFGFIICVAATGARALKSVLQGILLSSEGEKLNSMNLLLYMAPMAVVFLLPATLIMEENVVGITLALARDDSKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMMGYSLTVFGVILYSEAKKRSK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01768 510 SUPERFAMILY Multidrug resistance efflux transporter EmrE 401 504 - -
Vimu6g01768 510 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 352 - -
Vimu6g01768 510 Pfam Triose-phosphate Transporter family 215 503 IPR004853 -
Vimu6g01768 510 PANTHER SOLUTE CARRIER FAMILY 35 214 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01768 Vimu-Chr6 16034145 16040377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01768 204 510 Organic Solute Cotransporters AT3G11320 90.228 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01768 - - vra:106757848 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01768 6 16034145 16040377 Vimu1g00950 1 6701857 6704801 ECH
Vimu6g01768 6 16034145 16040377 Vimu6g01768 6 16034145 16040377 ECH
Vimu6g01768 6 16034145 16040377 Vimu1g00950 1 6701857 6704801 PCT