Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01758 ATGACGGAGGAGCGGAACGTGCGAAAAACACGTGTGGTCGACGTGGTTCTCGACTGCGTCATACCCTACATCGACGACCCTAAGGACCGGGATGCCGTTTCCCAGGTGTGTCGACGTTGGTACGAGCTCGACTCCCTTACCCGGAAGCACGTCACAATCGCCCTCTGCTACACCACCACACCGGCACGCCTCCGTCGTCGCTTTCCGCACCTGGAGTCGCTTAAACTCAAGGGGAAGCCCCGCGCCGCAATGTTCAACCTGATTCCCGAGGATTGGGGAGGCCACGTGACCCCCTGGGTTGAGGAAATCTCTCAGTACTTCGATTGCCTGAAGAGCCTCCACTTCCGCCGAATGATTGTCACCGATTCCGATCTTCAGCTCCTTGCTCGCTCCCGAGGTCACGTTCTGCAGGCTCTCAAGCTTGACAAGTGTTGCGGTTTCTCCACAGATGGACTTCTCCATATTGGTCGCCTTTGCAAGAATTTGAGAGTGCTGTTTCTGGAGGAAAGTTCTATTGTTGAGAAGGACGGAGAATGGCTACACGAACTTGCTTTGAATAATACGGTTCTTGAGGATCTGAATTTTTACTTGACAGACATTGCTTGTATAAGGAATCAGGACCTTGAACTCCTGGCTAGAAACTGCCCCAACCTAGTGTCTGTGAAACTCACTGATTGTGAAATACTTGATCTTGTGAACTTCTTTAAGCATGCGTCTGCTCTGGAAGAGTTTTGTGGAGGCACCTACAACGCGGAACCAGAAAATTACTCTGCTATATCATTGCCAGCAAAGTTATGTCGATTGGGTTTAACGTATATTGGAAAGAATGAGTTGCCCATAGTGTTCTTATTTGCAGGCGTACTAAAAAAATTGGATCTCCTCTATGCAATGCTGGACACAGAGGATCATTGTACCTTAATCCGAAAGTGTCCAAATCTGGAAGTCCTTGAGACGAGGAATGTAATTGGCGATAGAGGGTTAGAAGTTCTTGGTCGTTGTTGTAGGAGGCTAAAAAGGCTTAGGATTGAAAGGGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTACTGTGTCTCATAGAGGGCTAATAGCCTTGTCACAGGGCTGTTCAGAGCTTGAATACATGGCTGTTTACGTGTCCGATATTACAAATGCATCTCTGGAACATATTGGAAGTCACTTAAAAAAGCTATGCGATTTTCGCCTAGTGTTACTTGATCATGAAAAGAAAATAACTGATTTGCCACTGGACAACGGAGTGAGGGCTCTCCTGAGGGGCTGTGAGAAGCTGAGACGATTTGCTCTATATCTGAGGCGGGGGGGTTTGACTGATGTAGGTCTTGGTTACATAGGACAGTACAGTTCAAATGTTCGATGGATGCTGCTCGGGTATGTGGGGGAGTCTGATGCAGGGCTTTTGGAATTCTCAAAGGGGTGTCCTAGTCTTCAGAAACTTGAAATGAGAGGGTGTTCTTTTTTCAGTGAGCGAGCACTTGCTGTGGCTGCAACGCGATTAACTTCTCTAAGGTACTTGTGGGTTCAAGGGTATGGAGCATCTCCATCTGGGCATGACCTTTTGGCAATGGCTCGCCCCTTTTGGAACATTGAGTTGATTCCTTCTAGAAAGGTGCCTAACCATCAGGATGAGACTGTAGTTGTTGAGCATCCAGCTCATATTCTTGCCTATTATTCTCTTGCAGGGCAGAGATCAGATTTTCCAGATACTGTTGTGCCTTTGGAAACTGCCACGCGTCTTGTTCACGCCTAG 1770 0.478 MTEERNVRKTRVVDVVLDCVIPYIDDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVEEISQYFDCLKSLHFRRMIVTDSDLQLLARSRGHVLQALKLDKCCGFSTDGLLHIGRLCKNLRVLFLEESSIVEKDGEWLHELALNNTVLEDLNFYLTDIACIRNQDLELLARNCPNLVSVKLTDCEILDLVNFFKHASALEEFCGGTYNAEPENYSAISLPAKLCRLGLTYIGKNELPIVFLFAGVLKKLDLLYAMLDTEDHCTLIRKCPNLEVLETRNVIGDRGLEVLGRCCRRLKRLRIERGDDDQGMEDEEGTVSHRGLIALSQGCSELEYMAVYVSDITNASLEHIGSHLKKLCDFRLVLLDHEKKITDLPLDNGVRALLRGCEKLRRFALYLRRGGLTDVGLGYIGQYSSNVRWMLLGYVGESDAGLLEFSKGCPSLQKLEMRGCSFFSERALAVAATRLTSLRYLWVQGYGASPSGHDLLAMARPFWNIELIPSRKVPNHQDETVVVEHPAHILAYYSLAGQRSDFPDTVVPLETATRLVHA 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01758 589 Gene3D - 2 48 - -
Vimu6g01758 589 FunFam Coronatine-insensitive protein 1 49 583 - -
Vimu6g01758 589 Pfam F-box 10 50 IPR041567 -
Vimu6g01758 589 SUPERFAMILY RNI-like 360 517 - -
Vimu6g01758 589 Gene3D Ribonuclease Inhibitor 49 584 IPR032675 -
Vimu6g01758 589 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 28 249 - -
Vimu6g01758 589 SMART LRR_CC_2 107 131 IPR006553 -
Vimu6g01758 589 SMART LRR_CC_2 480 505 IPR006553 -
Vimu6g01758 589 SMART LRR_CC_2 370 394 IPR006553 -
Vimu6g01758 589 SMART LRR_CC_2 428 454 IPR006553 -
Vimu6g01758 589 CDD F-box_AtTIR1-like 14 48 - -
Vimu6g01758 589 Pfam Transport inhibitor response 1 protein domain 69 115 IPR041101 -
Vimu6g01758 589 SUPERFAMILY RNI-like 87 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01758 Vimu-Chr6 15984951 15989149 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01758 K13463 - gmx:100779171 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01758 6 15984951 15989149 Vimu6g01758 6 15984951 15989149 ECH
Vimu6g01758 6 15984951 15989149 Vimu1g00942 1 6658200 6662596 PCT