Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00942 ATGGAGGATCGGGATGCCCGCCGGATGGCGACTGCTACTAAGCTATCGGATGTGGTTTTGGACTGTGTGATGCCGTACATCCATGACCCCAAGGACAGGGATGCGGTGTCGCAGGTGTGTCACCGGTGGTACGAACTGGACTCGCTCACACGGAAGCACGTCACGATTGCGCTTTGCTACACGACCACGCCTGACCGGCTCCGGAGGCGGTTCCCGCACCTAGAGTCGCTGAAGCTGAAAGGGAAGCCCCGAGCAGCTATGTTCAACCTCATACCGGAGGATTGGGGAGGTTTCGTTACACCGTGGGTTAAAGAGATCTCTCAGTACTTCGATTGCTTGAAGTCACTTCACTTTCGCCGCATGATTGTGACAGATTCCGATCTTCAGGTTCTTGCTTACTCGCGTGGTCACGTACTTCAGGCGCTCAAGCTCGATAAGTGCTCCGGATTCTCCACGGATGGCCTTTATTATATTGGTCGCTTTTGCAGGAATTTGAGAATCTTGTTGTTAGAGGAAAGCTCACTTGTTGAGAATGATGGTGACTGGCTCCATCAGCTTGCTTTGAATAATACAGTTCTGGAGACCCTAAATTTTTACTTGACTGACATTGCCAATGTCAGAATCCAGGACCTTGAACTTATAGCCAGAAATTGCCCCAACTTAAACTCAGTGAAAATTACTGATTGTGAAGTATTAGATTTGGTGAACTTCTTTCGGTATGCATCTGCTCTAGAAGAATTTTGCGGAGGATCCTACAACGAAGAATCAGAGAAGTACGCTGCTATATCATTGCCAGCAAAATTAAGTCGTTTGGGTTTGACATATATTACAAAGAATGAAATGCCCATAGTGTTCCCTTATGCAGCCTTACTGAAAAAATTGGATCTTTTGTATGCAATGCTGGATACAGAGGACCATTGTACGTTAATCCAGAGGTGCCCCAACTTGGAAGTACTTGAGTCAAGGAACGTGATTGGAGACAGAGGATTAGAAGTGCTTGCTCGCTGTTGTAGGAAGCTTAAAAGGCTTCGGATTGAAAGAGGTGACGATGATCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCACAAAGAGGACTAATTGCTTTGTCACATGGCTGTCCAGAGCTGGAATATTTGGCCGTTTATGTATCCGACATTTCAAATGCATCTCTAGAACACATTGGTACTCACTTGAAAAACCTTTGTGATTTTCGCCTTGTCTTGCTTGACCGAGAAGAGAAAATAACTGATTTGCCACTTGACAACGGAGTGAGAGCTTTACTGAGGGGTTGTGATAAGCTCAGAAGATTTGCTCTGTATCTGAGACCTGGGGGCTTGACCGATGTGGGACTGGGTTACATAGGACAATACAGCCCAAACGTGAGATGGATGCTTCTAGGGTATGTAGGAGAGACTGACGAAGGGCTGTTGGAATTCTCTAAGGGCTGCCCCAGTCTTCAGAAGCTTGAAATGAGGGGATGCTCCTTTTTTAGTGAGTATGCACTAGCTGTTGCTGCAACTCAACTAACTTCTCTGAGATACCTATGGGTTCAAGGTTATGGAGCATCTCCTTCTGGGCGTGATCTTTTGGCAATGGCTCGGCCCTATTGGAACATTGAGTTGATTCCTTCTAGACGCGTGGTTGTGAACAATCAACAGGAAGAACCTGTAGTTGTTGAACATCCGGCTCATATTCTTGCATATTACTCCCTTGCTGGCCCAAGAACAGATTTTCCAGAAACTGTTATACCTTTGGATACTGCAACATATGTTGACACTTAA 1782 0.4602 MEDRDARRMATATKLSDVVLDCVMPYIHDPKDRDAVSQVCHRWYELDSLTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVKEISQYFDCLKSLHFRRMIVTDSDLQVLAYSRGHVLQALKLDKCSGFSTDGLYYIGRFCRNLRILLLEESSLVENDGDWLHQLALNNTVLETLNFYLTDIANVRIQDLELIARNCPNLNSVKITDCEVLDLVNFFRYASALEEFCGGSYNEESEKYAAISLPAKLSRLGLTYITKNEMPIVFPYAALLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRKLKRLRIERGDDDQGMEDEEGVVSQRGLIALSHGCPELEYLAVYVSDISNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDEGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATQLTSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVVVNNQQEEPVVVEHPAHILAYYSLAGPRTDFPETVIPLDTATYVDT 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00942 593 Gene3D - 1 51 - -
Vimu1g00942 593 SMART LRR_CC_2 483 507 IPR006553 -
Vimu1g00942 593 SMART LRR_CC_2 373 397 IPR006553 -
Vimu1g00942 593 SMART LRR_CC_2 136 161 IPR006553 -
Vimu1g00942 593 SMART LRR_CC_2 313 336 IPR006553 -
Vimu1g00942 593 SMART LRR_CC_2 218 237 IPR006553 -
Vimu1g00942 593 SMART LRR_CC_2 431 457 IPR006553 -
Vimu1g00942 593 FunFam Coronatine-insensitive protein 1 52 588 - -
Vimu1g00942 593 FunFam F-box/LRR-repeat protein 4 12 51 - -
Vimu1g00942 593 Pfam Transport inhibitor response 1 protein domain 72 118 IPR041101 -
Vimu1g00942 593 Gene3D Ribonuclease Inhibitor 52 589 IPR032675 -
Vimu1g00942 593 SUPERFAMILY RNI-like 365 520 - -
Vimu1g00942 593 SUPERFAMILY RNI-like 90 402 - -
Vimu1g00942 593 CDD F-box_AtTIR1-like 14 51 - -
Vimu1g00942 593 Pfam F-box 13 53 IPR041567 -
Vimu1g00942 593 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 31 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00942 Vimu-Chr1 6658200 6662596 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00942 K13463 - gmx:100793081 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00942 1 6658200 6662596 Vimu1g00942 1 6658200 6662596 ECH
Vimu6g01758 6 15984951 15989149 Vimu1g00942 1 6658200 6662596 PCT