Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01748 ATGGTTGATTTACATTGGAAATCAAAGATACCTGCTTCCGACATGTCTTCCAAATCTCCAAAACTCTCCCTCCCAGCAGCCAACTCCTTACCATCTCTGCAACTACCCTTCCGCACCACAGACATCTCTCCCGCTCCACCTGCACTCTGTGCTGCATACGATTACTATCTCTCTCTCCCACAACTCAGAACCCTTTGGAATTCAAGAGACTTTCCCAATTGGAACAACGAACCCATTTTAAAACCTGCCCTGCAAGCTTTGGAAGTCACCTTCCGTTTTCTTTCCATTGTTTTCTCCGATCCCAGGCCTCATTCCAACCACAGGGAATGGAACCGTGTCATAGAGTCTCTCGCCATTCATCAGATTGAGATCATAGCCATGCTGTGCCAAGACGAGGAGCTCAATTCTCAGACACGTGGCACCGTCCCAACAGCTGATCTTACTGTAGATAGCACCAACAATAGCGAGACCCGAAGCTACAGCGAGGCCAGCCTTCTTCCGCGCCTTGCCACATGGTACAAATCCAAGGACGTGGCACAGAGGATTCTTCTCACCGTTGAGTGCCAAATGAGGAGGTGTAGCTATACGCTAGGTTTGGGAGAGCCGAACCTGGCGGCGAAACCGAGCCTGCTCTACGACCGCGTCTGCAGACCGAGTGAAATCCACGCGCTCAAGACTACGCCTTACGACGAACGCGTGGAGAACTACGAGAACCACGCTGTGCACGCCACGCACCAAATCGCGGAGTCGTGGATCCACACATCGCGGAAGCTTCTGGAAAGGATCGCCGATGCTATCCACAGCAAAAGGTTGGAGCAGGCGGCGGAGGACTGCCACGCAGTGGAGCGCATCTGGAAGCTTCTCGCAGAGGTGGAGGATCTTCACCTGATGATGGATCCGGACGAATTCCTGCGTTTGAAGAACCAGCTCTCGGTGCGCTCCTCGAGCGGCGAAACGGCGTCTTTCTGCTTCAGGTCAAAGGAATTGGTGGAACTGACGAAAATGTGCAGAGATCTGAGGCACATGGTGCCGCAGATATTGGAGGTGGAGGTGGACCCGAAGGGAGGACCGAGAATTCAAGAAGCGGCGATGAAACTGTACGTCTCGAAGAGCGCGTTCGAGAAGGTTCACCTGTTGCAGGCGATGCAGGCGATCGAGGCAGCAATGAAGAGGTTCTTCTACGCGTATAAACAAGTTCTGACGGTGGTGATGGGAAGCTCGGAGGCTAACTGCAACCGAGTTGGGCTGAGTTGCGACTCGGCTGACTCGTTGACTCAGATATTCCTTGAACCGACGTATTTTCCAAGCTTGGATGCCGCCAAGACTTTCCTTGGGTACCTCTGGGATAATAACGATTACAAGTGGCCATAA 1371 0.5288 MVDLHWKSKIPASDMSSKSPKLSLPAANSLPSLQLPFRTTDISPAPPALCAAYDYYLSLPQLRTLWNSRDFPNWNNEPILKPALQALEVTFRFLSIVFSDPRPHSNHREWNRVIESLAIHQIEIIAMLCQDEELNSQTRGTVPTADLTVDSTNNSETRSYSEASLLPRLATWYKSKDVAQRILLTVECQMRRCSYTLGLGEPNLAAKPSLLYDRVCRPSEIHALKTTPYDERVENYENHAVHATHQIAESWIHTSRKLLERIADAIHSKRLEQAAEDCHAVERIWKLLAEVEDLHLMMDPDEFLRLKNQLSVRSSSGETASFCFRSKELVELTKMCRDLRHMVPQILEVEVDPKGGPRIQEAAMKLYVSKSAFEKVHLLQAMQAIEAAMKRFFYAYKQVLTVVMGSSEANCNRVGLSCDSADSLTQIFLEPTYFPSLDAAKTFLGYLWDNNDYKWP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01748 456 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 212 444 IPR037217 GO:0019441|GO:0020037|GO:0046872
Vimu6g01748 456 Pfam Hs1pro-1 protein C-terminus 190 450 IPR009743 -
Vimu6g01748 456 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 1 452 IPR038759 -
Vimu6g01748 456 MobiDBLite consensus disorder prediction 1 20 - -
Vimu6g01748 456 Gene3D - 210 443 - -
Vimu6g01748 456 Pfam Hs1pro-1 N-terminus 1 187 IPR009869 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01748 Vimu-Chr6 15901134 15903760 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01748 - - gmx:547603 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01748 6 15901134 15903760 Vimu6g01748 6 15901134 15903760 ECH
Vimu6g01748 6 15901134 15903760 Vimu1g00930 1 6509678 6511039 PCT