Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00930 ATGGTTGATCTAGATTGGCAAACAAAGATGGTTTGTTCCAACATGCCTCCCAACTCACCCAAACTCTCTCTCTTAGAAAACAACATCCCAATCCCAATCCCTACTTTGCAAATCCCCCTTCCTCAAAACGACATCACGCCAGCCTCCTCCCCGCTTTGTGCTGCCTACGACAACTACCTTCGCCTCCCCGACCTAAGAAATCTTTGGGCCTCCAACAACTTCCCCGATTGGCCCAACGAGCCCATCATAAAGCCCGCCTTACATGCCCTCGAAATCACCTTCCGCTTTCTCGCAACCGTTTTATCAGACCCAAGGCCCTACGTTAACAAGCGCGAGTGGACCCGACGCCTCGAGTCTCTCGCCGCGGCGCAGGTCCAGATCATTGCCGTGCTCTGCGAAGACGAGGAGCAAAACCCCCAGACACGTGGCAAGGCACCCGTCAGTGACGTCAACGACTTCGTCACGGGTCAAAGAAGAAGCTACAGCGAGGAGAGCTTGCTCCCGCGTCTCGCCACGTGGCACAGATCCAGGGACGTGGCGAGGAGGATCCTCGCCACCGTGGAATGCGAGATGATGAGGTGCACGTACACGCTGGGTCTGGGAGAGGCCAATCTCGCGGGAAAGAAGGTTCTCCATTACGACGACGTTTGCAGGCCGACCGAGATCCGATCCCTGGAGACCACGCCGTACGATCACGTGGAGAACTACGAGAACAGGACGGTGCACGCGGCGCAGCAGATCGTGGAGTGCTGGACGCGTGTGGGGAGGAGGTTGGTGGAGAGATTGGTGGAGTCGGTGGAGAGGAGAGAGTTGGAGAAGGCGGCGAGTGAGTGCCACGCGGTGGAACGGATCTGGAAGCTTCTGGCGGAGGTTGAGGACGTGCATGTGATGATGGATCCGGAGGATTTTCTTCGGCTGAAGAAGGAATTGGGGATGGGAAGGCAAGGCGAAACGGTGGCGTTTTGCTTTAGGTCTAAGGAGGTTGTGGAGTTGGCGAGGGTGTGTAGGGATCTGAGGCAGAAGGTGCCGGAGATATTGGAGGTGGAGGTTGACCCGAAGGGTGGGCCAGGGATGATGGAGGCGGCGATGAAGGTGTACGCGGAAAAAACGAAGGGGTTGGAAAAGGTTGTTGTTTTGCAGGGTATGCAAGCGATTGAGGTGGCCATGAAGAGATTCTTCTTCGCTTACAAGCAGGTTGCGTCGCTTCTGATGGGAAGCTCCGAGGCCGATGGGTTAACTCAGATATTCCTTCAACCCACCTATTTCCCTAGCTTGGATGCTGCCAAGACATTCCTCAGTTATTACTGGGAAAATAACGCCAATAACCAAACTCAAAATTTGGTAGTTAAATTAGTTAATTAA 1362 0.547 MVDLDWQTKMVCSNMPPNSPKLSLLENNIPIPIPTLQIPLPQNDITPASSPLCAAYDNYLRLPDLRNLWASNNFPDWPNEPIIKPALHALEITFRFLATVLSDPRPYVNKREWTRRLESLAAAQVQIIAVLCEDEEQNPQTRGKAPVSDVNDFVTGQRRSYSEESLLPRLATWHRSRDVARRILATVECEMMRCTYTLGLGEANLAGKKVLHYDDVCRPTEIRSLETTPYDHVENYENRTVHAAQQIVECWTRVGRRLVERLVESVERRELEKAASECHAVERIWKLLAEVEDVHVMMDPEDFLRLKKELGMGRQGETVAFCFRSKEVVELARVCRDLRQKVPEILEVEVDPKGGPGMMEAAMKVYAEKTKGLEKVVVLQGMQAIEVAMKRFFFAYKQVASLLMGSSEADGLTQIFLQPTYFPSLDAAKTFLSYYWENNANNQTQNLVVKLVN 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00930 453 Pfam Hs1pro-1 protein C-terminus 191 438 IPR009743 -
Vimu1g00930 453 Pfam Hs1pro-1 N-terminus 1 188 IPR009869 GO:0006952
Vimu1g00930 453 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 212 432 IPR037217 GO:0019441|GO:0020037|GO:0046872
Vimu1g00930 453 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 1 445 IPR038759 -
Vimu1g00930 453 Gene3D - 211 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00930 Vimu-Chr1 6509678 6511039 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00930 - - gmx:100778560 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00930 1 6509678 6511039 Vimu1g00930 1 6509678 6511039 ECH
Vimu6g01748 6 15901134 15903760 Vimu1g00930 1 6509678 6511039 PCT