Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01745 ATGTCGCGCCAGAAGCAAGGAGAAGAAGCCATGATGTCCAGTCTCACCCAAACTGTCCAGCATGAAGAGGGAGAGGAAGTCAAAGGGGAGACGTCACAATTTACCTTAAAAAATGCTTTCTGGCACGGTGGTTCTGCCTATGATGCTTGGTTCAGCTGTGCCTCAAATCAGGTTGCCCAGGTTCTGTTGACTCTGCCTTACTCTTTCGCCCAGCTGGGTGTGGTTTCAGGCGTCGTATTCCAAGTGTTCTATGGCTTGCTGGGGAGTTATACTGCTTATTTAATTAGTATTCTGTACATTGAGTACAGAAGCCGGAAAGAGAAAGAGAATGTCAGCTTCAAAAACCATGTCATCCAGTGGTTTGAAGTGTTGGAAGGCTTACTGGGTCCATACTGGAAAGCCATAGGATTGGCCTTCAATTGCACTTTTCTCCTCTTTGGATCTGTTATCCAGCTCATAGCTTGTGCCAGTAATATATACTACATCAATGATCACTTGGACAAGAGGACTTGGACCTACATATTTGGGGCTTGTTGTGCCACCACAGTGTTCATTCCATCATTTCACAACTACAGGATATGGTCCTTCCTTGGTCTTGGCATGACCACCTACACTGCTTGGTATTTGACCATCGCATCACTTGTTCATGGCCAGGTTGAAAATGTGACACATTCGGGCCCAAAAAAGTTGGTTTTGTATTTCACAGGCGCCACCAACATACTCTACACTTTCGGCGGGCACGCCGTCACAGTGGAAATCATGCATGCAATGTGGAAGCCTCAGAAGTTCAAATATATATATCTGTATGCAACATTTTATGTGTTCACCCTCACTATCCCCTCTGCTGTTTCGGTGTACTGGGCATTCGGTGACCAACTTTTGGATCACTCCAATGCCTTCTCACTTCTCCCGCGTACTGGCTGGCGTGACGCCGGTGTCATCCTAATGCTCATTCACCAGATTATCACATTTGGCTTTGCTTGTACGCCATTGTATTTTGTGTGGGAAAAAGTGATAGGGATGCATGACACAAAGAGCATATGCTTGAGGGCTCTAGCAAGGTTGCCTGTGGTCATACCAATATGGTTTTTGGCTATTATTTTCCCTTTCTTTGGACCCATTAATTCAGCTGTGGGGGCTCTTTTGGTGAGCTTCACCGTTTACATCATTCCCGCTTCAGCCCATATGCTTACCTTCAGATCTGCCGCAGCCAGACAGAATGCTGCGGAGAAATTGCCCTTCTTCATTCCGAACTGGACATTGATGTACGTGGTGAATGCATTGGTGGTGGTGTGGGTTCTGGTGGTGGGCTTTGGATTTGGAGGATGGGCTAGCATGGTGAATTTCATGAAACAGGTTGACACATTTGGACTATTTGCCAAGTGCTACCAGTGCCCGCCCAAACTCACCAACCATACCCTCCATCACTCATAA 1434 0.4665 MSRQKQGEEAMMSSLTQTVQHEEGEEVKGETSQFTLKNAFWHGGSAYDAWFSCASNQVAQVLLTLPYSFAQLGVVSGVVFQVFYGLLGSYTAYLISILYIEYRSRKEKENVSFKNHVIQWFEVLEGLLGPYWKAIGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASLVHGQVENVTHSGPKKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLYATFYVFTLTIPSAVSVYWAFGDQLLDHSNAFSLLPRTGWRDAGVILMLIHQIITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPASAHMLTFRSAAARQNAAEKLPFFIPNWTLMYVVNALVVVWVLVVGFGFGGWASMVNFMKQVDTFGLFAKCYQCPPKLTNHTLHHS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01745 477 MobiDBLite consensus disorder prediction 1 20 - -
Vimu6g01745 477 MobiDBLite consensus disorder prediction 1 25 - -
Vimu6g01745 477 PANTHER OS05G0424000 PROTEIN-RELATED 48 426 - -
Vimu6g01745 477 Pfam Transmembrane amino acid transporter protein 42 435 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01745 Vimu-Chr6 15870502 15874390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01745 4 465 Organic Solute Cotransporters AT2G21050 75.758 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01745 K13946 - gmx:100795466 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01745 6 15870502 15874390 Vimu6g01745 6 15870502 15874390 ECH
Vimu6g01745 6 15870502 15874390 Vimu1g00927 1 6469345 6474136 ECH
Vimu6g01745 6 15870502 15874390 Vimu1g00927 1 6469345 6474136 PCT