Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00927 ATGTTAACCCAGAAGCAAGGTGAAGAAACCATGATGTCAAGCCTGAATGAAACTGTTGAACGTGAAGAGAGAGAGGATGAGAAGGTGGGTGATTCACATTCCAGTTTGAGAAGCATTCTGTGGCATGGTGGATCTGTTTATGATGCATGGTTCAGCTGTGCTTCAAATCAGGTTGCGCAGGTTCTGCTAACACTGCCATACTCTTTCGCTCAGCTGGGAATGCTTTCTGGCGTCATATTCCAGGTCTTCTATGGAATAATGGGAAGTTGGACTGCTTATTTGATTAGCATTCTGTACATCGAGTACAGGAGCAGAAAAGAGAAAGAGAATGTCAGCTTCAAAAACCATGTCATTCAGTGGTTTGAAGTGCTGGAAGGTTTACTAGGTCCATATTGGAAAGCCATTGGCTTGGCCTTTAACTGCACTTTTCTCCTCTTCGGATCTGTCATCCAGCTTATAGCTTGTGCAAGGACCTGGACTTACATATTCGGAGCATGCTGCGCCACCACGGTGTTCATACCTTCATTTCACAACTACAGGATTTGGTCTTTCCTTGGTCTTGGCATGACCACGTACACAGCCTGGTACTTAACCATTGCAGCCATCGTTCATGGCCAGGTTGAAAATGTGACTCACACGGGCCCCAAAAAATTGGTTTTGTATTTCACGGGAGCCACCAACATTCTCTACACTTTCGGCGGGCACGCCGTCACAGTGACTGACAAAACGAATTTCCTTTTGAACTTGGAGCATATTATTAGAAATGAAAGGAATTTGTATGATATTGAGATGAGAGCATCTGGGTCATTGGTTGGGGATGGATTTAAGTTGGTATTGCTGCATTATGCACTAACGTGTGGACCCTATGACTATTACAGGGAAATCATGCATGCAATGTGGAAACCTCAAAAGTTCAAATATATCTATCTTTATGCTACTCTTTTTGTATTCACACTCACCCTACCATCTGCCATTGCCGTTTACTGGGCCTTTGGTGACCAACTCCTGGACCACTCCAATGCCTTCTCTCTTCTCCCTCGCTCTGGTTGGCGTGACACAGGTGTCATCTTAATGCTGATTCACCAGTTTATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAAGTGATAGGAATGCATGACACAAAGAGCATATGCTTGAGGGCTCTTGCAAGGTTGCCTGTGGTGATACCAATATGGTTTTTGGCCATTATTTTCCCTTTCTTTGGCCCTATAAACTCTGCTGTGGGAGCTCTTTTGGTTACCTTTACCGTCTATATCATCCCTGCTTCTGCCCACATGCTTACTTACAGGTCTGCTTCTGCACGACAGAATGCTGCTGAGAAATTGCCCTTTTTCATCCCAAGCTGGACGTTAATGTATGTGATCAATGCATTTGTGGTAGTGTGGGTTCTAGTGGTGGGATTTGGATTTGGAGGGTGGGCTAGCATGGCAAACTTCATCAAACAGGTTGACACATTTGGACTCTTTGCCAAGTGCTACCAGTGCCCCCCGCATAAAACACCAGCTTCCAACCAAACACTGCATCACTGA 1566 0.4489 MLTQKQGEETMMSSLNETVEREEREDEKVGDSHSSLRSILWHGGSVYDAWFSCASNQVAQVLLTLPYSFAQLGMLSGVIFQVFYGIMGSWTAYLISILYIEYRSRKEKENVSFKNHVIQWFEVLEGLLGPYWKAIGLAFNCTFLLFGSVIQLIACARTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAIVHGQVENVTHTGPKKLVLYFTGATNILYTFGGHAVTVTDKTNFLLNLEHIIRNERNLYDIEMRASGSLVGDGFKLVLLHYALTCGPYDYYREIMHAMWKPQKFKYIYLYATLFVFTLTLPSAIAVYWAFGDQLLDHSNAFSLLPRSGWRDTGVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVTFTVYIIPASAHMLTYRSASARQNAAEKLPFFIPSWTLMYVINAFVVVWVLVVGFGFGGWASMANFIKQVDTFGLFAKCYQCPPHKTPASNQTLHH 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00927 521 Pfam Transmembrane amino acid transporter protein 42 239 IPR013057 -
Vimu1g00927 521 Pfam Transmembrane amino acid transporter protein 294 477 IPR013057 -
Vimu1g00927 521 PANTHER OS05G0424000 PROTEIN-RELATED 48 468 - -
Vimu1g00927 521 Coils Coil 5 25 - -
Vimu1g00927 521 MobiDBLite consensus disorder prediction 1 30 - -
Vimu1g00927 521 MobiDBLite consensus disorder prediction 15 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00927 Vimu-Chr1 6469345 6474136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00927 22 507 Organic Solute Cotransporters AT2G21050 67.068 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00927 K13946 - gmx:100817572 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01745 6 15870502 15874390 Vimu1g00927 1 6469345 6474136 ECH
Vimu1g00927 1 6469345 6474136 Vimu1g00927 1 6469345 6474136 ECH
Vimu6g01745 6 15870502 15874390 Vimu1g00927 1 6469345 6474136 PCT