Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01723 ATGAAAATCGAAGCATTCAAGATCAAGATGTTAAATTTCTTGACCAAAAGGGAGAAAGCTTGCAAGGCAGAACATCCTTCGGACCTTAAGGAAGCCTTTTCCAAGTTTGCGAGAGGAGGGAGCCAAATGAACAAGGATCAGCTTCTTCGGTTCATTGTGGAGCACCAGGGAGATAATATCGGCGGCGAAGAGGATTTGGATAAAATAGTTGAGAGTTTTTTAGTAGCACGGAGTTGTAGTTCTAGCTCCAGAACCAGATCTGCAAGATTTCCTGATGTGTACAATAAACAAGGGTTAACTCTCAATGACTTCGTCGATTTTCTGCTTCTGCATGATTTCAATGCCGCCTTGAATGACAAGGTACATCATGATATGAATGCTCCCATGTCACATTATTTTATGTATACGGGACACAATTCCTATCTGACTGGGAATCAATTTACCAGTGAGAGCAGTGACGAGCCAATTATTGAGGCTTTGAAACAAGGTGTACGAGTAATAGAACTAGATTTATGGCCATCTAAATCTTCAACTAAAGATGGCATTAAAGTGGTTCATGGAAGGACTTTTACCACTCCAGTCGCCCTACGCACATGTCTAAAATCCATAAAGAAATATGCATTTTATAAATCAGATTATCCAGTAATTCTTACTTTGGAAGACCACCTAAAACCAAAACATCAGGATAAATTTGCAGAAATGGCATTTGAAATATTTGGAGAAATGCTTTATTGTCCCAAAACAGAGTCTTTGACAGAATTCCCCTCACCAGAATCGTTGAAAAAACGGATAATTATATCAACCAAACCCCCAAAGGAATTTCAGCAATCTGATAGTATCAGCAAAAGCAAAGCTGGGCCAAATCAATGTGAAACCCCTGACGAAGAATTTTGGGGACTGGAATTGTCAGATTCTGTGTCTAAACTAACTGAGGACAAGGGGAATGCACGTGATGCAGATCGGGAAAATATAAACACAAGCAATAACATTCCAAACAAACAAGGTGTATTGCCATACAAACACTTGATCACAATCCATGGTGGGAAAACAAAAGGTTCCATCAAGGATCAACTAAAAGATGATACTAAAGTTAAACGGCTGAGTTTGAGTGAGAAGAAACTAAAAAGTGCTTCTGAGTCTCATGGAGCCGACCTTATTAGGTACCTATCAAACTTATTTGAGCGTTACCACATTTCTATACTTGACAATACCCATTGCACACTTACACAAGGTTTGATAGAAATTGTTATCCTTTCCAGGTTCACACAGAAAAATATCCTCAGGGTTTATCCTAAAGGAGAACGTGTCAAATCCTCAAATTTCAGGCCACATTTAGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGCATGGAAAATCACTCCGGTTGATGCAGGGAATGTTCAGAGCAAATGGAGGGTGTGGTTATGTTAAAAAGCCTGAATTTATAATCCGAACACTTCCACATGACGAGGTGTTTGATCCTAAAAAACAACTGCCAGTGAAAGAGATCTTAAGAGTAAAAGTCTACAAAGGAGATGGTTGGAATTTAGATTTCAGTCCAACACACTTTGATCGATTCTCTCCACCAGACTTTTACACAAAGGTGTGCATTGTTGGAGTGCCATCTGATTGTGTGAAGAAGAAAACAAGTGTAAATACGGACACATGGTATCCTGTTTGGGATGAAGAGTTTAAATTCGAATTGAGGGTTCCTGAGCTTGCTTTACTTTGGATAGAAGTGAAGGACAGAGATAAGGGAAAAGATGACTTTGCAGGACAAACTTGTTTGCCAGTATCAGAGCTCAGGCAGGGATTCCGGTCAGTCCCTCTGTTTGACCCCAAAGGAAAGAAATTGAATTCTGTGAAACTTCTAATGCGCTTCAAGATTGAAACTTTAAATAACTTGTCGATATCACTCATTTAA 1938 0.3958 MKIEAFKIKMLNFLTKREKACKAEHPSDLKEAFSKFARGGSQMNKDQLLRFIVEHQGDNIGGEEDLDKIVESFLVARSCSSSSRTRSARFPDVYNKQGLTLNDFVDFLLLHDFNAALNDKVHHDMNAPMSHYFMYTGHNSYLTGNQFTSESSDEPIIEALKQGVRVIELDLWPSKSSTKDGIKVVHGRTFTTPVALRTCLKSIKKYAFYKSDYPVILTLEDHLKPKHQDKFAEMAFEIFGEMLYCPKTESLTEFPSPESLKKRIIISTKPPKEFQQSDSISKSKAGPNQCETPDEEFWGLELSDSVSKLTEDKGNARDADRENINTSNNIPNKQGVLPYKHLITIHGGKTKGSIKDQLKDDTKVKRLSLSEKKLKSASESHGADLIRYLSNLFERYHISILDNTHCTLTQGLIEIVILSRFTQKNILRVYPKGERVKSSNFRPHLGWMYGAQMVAFNMQGHGKSLRLMQGMFRANGGCGYVKKPEFIIRTLPHDEVFDPKKQLPVKEILRVKVYKGDGWNLDFSPTHFDRFSPPDFYTKVCIVGVPSDCVKKKTSVNTDTWYPVWDEEFKFELRVPELALLWIEVKDRDKGKDDFAGQTCLPVSELRQGFRSVPLFDPKGKKLNSVKLLMRFKIETLNNLSISLI 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01723 645 CDD C2_PLC_like 506 635 - -
Vimu6g01723 645 Gene3D C2 domain 503 643 IPR035892 -
Vimu6g01723 645 MobiDBLite consensus disorder prediction 271 288 - -
Vimu6g01723 645 ProSiteProfiles C2 domain profile. 488 617 IPR000008 -
Vimu6g01723 645 MobiDBLite consensus disorder prediction 312 331 - -
Vimu6g01723 645 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 12 634 IPR001192 GO:0035556
Vimu6g01723 645 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 508 633 IPR035892 -
Vimu6g01723 645 Gene3D Phosphatidylinositol (PI) phosphodiesterase 121 501 IPR017946 GO:0006629|GO:0008081
Vimu6g01723 645 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 123 269 - -
Vimu6g01723 645 SMART C2_3c 508 615 IPR000008 -
Vimu6g01723 645 SMART plcx_3 123 269 IPR000909 -
Vimu6g01723 645 MobiDBLite consensus disorder prediction 271 292 - -
Vimu6g01723 645 PRINTS Phospholipase C signature 154 174 IPR001192 GO:0035556
Vimu6g01723 645 PRINTS Phospholipase C signature 128 146 IPR001192 GO:0035556
Vimu6g01723 645 PRINTS Phospholipase C signature 426 447 IPR001192 GO:0035556
Vimu6g01723 645 PRINTS Phospholipase C signature 253 270 IPR001192 GO:0035556
Vimu6g01723 645 PRINTS Phospholipase C signature 447 465 IPR001192 GO:0035556
Vimu6g01723 645 PRINTS Phospholipase C signature 601 611 IPR001192 GO:0035556
Vimu6g01723 645 SUPERFAMILY PLC-like phosphodiesterases 123 395 IPR017946 GO:0006629|GO:0008081
Vimu6g01723 645 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 363 487 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu6g01723 645 SMART plcy_3 339 488 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu6g01723 645 FunFam Phosphoinositide phospholipase C 503 635 - -
Vimu6g01723 645 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 418 486 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu6g01723 645 SUPERFAMILY PLC-like phosphodiesterases 418 499 IPR017946 GO:0006629|GO:0008081
Vimu6g01723 645 Pfam C2 domain 508 609 IPR000008 -
Vimu6g01723 645 Gene3D - 22 120 - -
Vimu6g01723 645 Pfam Phosphatidylinositol-specific phospholipase C, X domain 125 269 IPR000909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01723 Vimu-Chr6 15723917 15727563 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01723 5 635 Acyl Lipid Metabolism Gene Families AT2G40116 49.617 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01723 K05857 - gmx:100803435 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01723 6 15723917 15727563 Vimu6g01723 6 15723917 15727563 ECH
Vimu6g01723 6 15723917 15727563 Vimu1g00912 1 6359742 6363232 PCT