Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00912 ATGGGAAACAACATGGCAACCCACAACAAATACAAAAGTTTCATGTTCTTTATCAGAAAGTTCAAGGTCATCGAGCCAGATCCACCTCAGGAACTTGAGGAGGCGTTTTCAAAGTTCACAGGAGGAGGGTCCCACATGTCCGTGGAGCAGCTCCACCGTTTCATGGTGGAGCACCAGGGTGAAGAGCACCACTCCTTATCGGACTCGGAAAAAGTTTTTGAGAGGATTTTGCAGGAGAGAAAAACATGTCAAGAAACTGTTAAGATTGATCACAGCACAGAACATGAGATCACCCTGGATGAGCTCTTCCGATTTTTGCTTCATAATGATTTCAGTGGTCCCTTGAAAACTCAGGTACATCATGATATGGGTGCTCCATTGTCACATTATTTTATATATACAGGCCACAACTCCTATTTGAAAGGGAATCAACTCAGCAGTGACTGCAGTGAAGAGCCAATAATAGAGGCTTTGAAACGAGGAGTTCGTGTTATAGAACTTGATCTATGGCCAACTTGCAATAAGGATGATATTAAAGTAGATCATGGATGGACTTTTACCAATCCTGTCTCAGTGGTGAAATGTCTAGAGTGCATAAAGGAATATGCTTTTGTTGCATCTCCATACCCTGTGATCATAACCATAGAAGACCATCTCACAACAGATCTTCGAGCTAAATTTGCAGAAATGGTAACTCAAATATTTGGGGAAGTGCTTTATTACCCTGGGGAAGAGTGCTGCTTAACAGAATTCCCTTCACCAGAATCACTGAAAAATCGAGTTATTATATCCACCAAACCCCCAAGAGAACGTTTTCAGTCCAACCAAATCAAGGACAATAGCAACTGTTCTATTCTGAACGAAAGTGAATCATCTGAAGAGGAATCATTCGGAAATGCATCTCCAAACTCCAGTAGGAACGAAGCAGAGACTGAGGACACAAATGGCAGTGATCGTGATGAGGGAAGCATAAGTGCAAGCGAATATGACCACAAACCATTTTTGGAGTGTTCACCTGATTACAAACGCATAATTACTATCCATAACACGAAACTGAAGGGTTGCCTAAAGGATAAATTGAGAACAGAAGGTGAAGTTAGACGCCTAAGTTGGAGTGAGAATACTCTTGAAAAGGCTTCAGAATCTCATGGAGCAGATATTCTTAGGTTCACACAGAAAAATATCCTTAGGGTGTATCCGAGTGCAATGCGTGTCAAATCCACAAATTTCAAGCCACATATTGGGTGGATGTATGGGGCTCAGATGGTGGCATTCAATATGCAGGGCCATGGCAAATCGCTCTGGTTGATGCAGGGAATGTTCAGGGCAAATGGAGGATGCGGTTATGTAAAGAAGCCTCAAATTCTAATGCAGAAGCATCAATTTGACAATGAGTATGATCCTACAAGGATAGAGTCAATGAAGAAGACATTAAAGGTCAAAGTATACATGGGACATGGATGGAGCTCAGATTTCAGTCCTACACACTTTGATAAGTGCTCTCCGCCAGACTTCTTCACTAAGATCCGAATTATTGGAATGCCTGGTGATGTTGCAAAGAACAAAACAAAGGTCATCATGGACAACTGGTTTCCTGTTTGGAATGAAGAATTTGAGTTCTGTTTAAGTGTTCCAGAGCTTGCAATGCTTATGATACAAGTAAAGGACAAAGATCAAGGAAAGGATGACTTTGCTGGGCAGACATGTTTACCAGTGTCAGAGTTAAAACATGGATTTCGCTCAGTGCCTTTATACGACAAAAAGGGAGAGAAATTTAAGTCTGTGAAGCTGTTGATGCGATTTCAGTTTGAATGA 1815 0.4154 MGNNMATHNKYKSFMFFIRKFKVIEPDPPQELEEAFSKFTGGGSHMSVEQLHRFMVEHQGEEHHSLSDSEKVFERILQERKTCQETVKIDHSTEHEITLDELFRFLLHNDFSGPLKTQVHHDMGAPLSHYFIYTGHNSYLKGNQLSSDCSEEPIIEALKRGVRVIELDLWPTCNKDDIKVDHGWTFTNPVSVVKCLECIKEYAFVASPYPVIITIEDHLTTDLRAKFAEMVTQIFGEVLYYPGEECCLTEFPSPESLKNRVIISTKPPRERFQSNQIKDNSNCSILNESESSEEESFGNASPNSSRNEAETEDTNGSDRDEGSISASEYDHKPFLECSPDYKRIITIHNTKLKGCLKDKLRTEGEVRRLSWSENTLEKASESHGADILRFTQKNILRVYPSAMRVKSTNFKPHIGWMYGAQMVAFNMQGHGKSLWLMQGMFRANGGCGYVKKPQILMQKHQFDNEYDPTRIESMKKTLKVKVYMGHGWSSDFSPTHFDKCSPPDFFTKIRIIGMPGDVAKNKTKVIMDNWFPVWNEEFEFCLSVPELAMLMIQVKDKDQGKDDFAGQTCLPVSELKHGFRSVPLYDKKGEKFKSVKLLMRFQFE 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00912 604 SMART plcx_3 121 266 IPR000909 -
Vimu1g00912 604 Pfam C2 domain 477 578 IPR000008 -
Vimu1g00912 604 SMART C2_3c 477 584 IPR000008 -
Vimu1g00912 604 SUPERFAMILY EF-hand 11 123 IPR011992 -
Vimu1g00912 604 Gene3D - 28 113 - -
Vimu1g00912 604 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 121 266 - -
Vimu1g00912 604 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 477 603 IPR035892 -
Vimu1g00912 604 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 370 456 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu1g00912 604 CDD C2_PLC_like 475 604 - -
Vimu1g00912 604 PRINTS Phospholipase C signature 152 172 IPR001192 GO:0035556
Vimu1g00912 604 PRINTS Phospholipase C signature 126 144 IPR001192 GO:0035556
Vimu1g00912 604 PRINTS Phospholipase C signature 250 267 IPR001192 GO:0035556
Vimu1g00912 604 PRINTS Phospholipase C signature 395 416 IPR001192 GO:0035556
Vimu1g00912 604 PRINTS Phospholipase C signature 570 580 IPR001192 GO:0035556
Vimu1g00912 604 PRINTS Phospholipase C signature 416 434 IPR001192 GO:0035556
Vimu1g00912 604 Gene3D C2 domain 472 604 IPR035892 -
Vimu1g00912 604 Gene3D Phosphatidylinositol (PI) phosphodiesterase 118 467 IPR017946 GO:0006629|GO:0008081
Vimu1g00912 604 MobiDBLite consensus disorder prediction 311 325 - -
Vimu1g00912 604 MobiDBLite consensus disorder prediction 288 325 - -
Vimu1g00912 604 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 366 454 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu1g00912 604 SUPERFAMILY PLC-like phosphodiesterases 121 458 IPR017946 GO:0006629|GO:0008081
Vimu1g00912 604 ProSiteProfiles C2 domain profile. 456 586 IPR000008 -
Vimu1g00912 604 FunFam Phosphoinositide phospholipase C 472 604 - -
Vimu1g00912 604 Pfam Phosphatidylinositol-specific phospholipase C, X domain 123 266 IPR000909 -
Vimu1g00912 604 SMART plcy_3 341 457 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu1g00912 604 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 10 603 IPR001192 GO:0035556
Vimu1g00912 604 MobiDBLite consensus disorder prediction 288 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00912 Vimu-Chr1 6359742 6363232 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00912 3 604 Acyl Lipid Metabolism Gene Families AT2G40116 52.327 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00912 K05857 - gmx:100820253 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01723 6 15723917 15727563 Vimu1g00912 1 6359742 6363232 PCT