Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01720 ATGTTTGAAGAGTTTCATTTCACCATGGCCACTCACAACTACAAAGTCTTCAGCTGCTTCAACAGAAAGTTCACCGTCACCGAACCGGAACCACCGCCCGACGTCCAAAAAGCCTTTTCTGAATTCTCTGAAGGCGCCTCCTCCATGTCCGCCGACCAACTGCTCCAGTTCCTTGCGGAGCATCAGGGCGAAGTGAACTGCACCGTTTCCGATTCCGAGCAGATCCTCCAGCAATCGAGGAAAGAGGACGGGGAAACTGGATTCGATCTCCACTACTTCTTCCATTTCCTGCAAGACAGCGATTTGAACGTCCCCTTGAAATCTCAGGTCCATCATGATATGAATGCTCCAATGTCACATTATTTCATATACACCGGGCACAATTCCTATCTGACAGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAAGCTTTGCAACGAGGTGTGCGAGTAATTGAACTGGATTTATGGCCAAATTCAGATAAAGATGATATCGATGTAGTTCATGGAAGGACTCTTACCACTCCAGTCTCACTCCTCCAATGTTTGAAGTCCATAAAAGAGTATGCCTTTGTTAAATCTCAGTACCCACTCGTTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCCAAAGTTGCAAAGATGGCCACCCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCCTTGATGGAATTCCCCTCACCAGAATCATTGAAAGGTCGAATTCTTATATCAACTAAACCACCAAAAGAATTTCTTGAATCCAGTGAAAAGGAATCAGCTGACGAGGTTTCCTCATTGCGAGAAAATGCTAATGAACAAAGAACTGATAATGAGGTGAGCATATTGACAAAAAGTGCACCAGAGTACAAACGCTTGATTACAATCCATGCTGGGAAACCGAAGGGTGAAATACAGGATGAATTAAAAGCTGCTGGTAAAGTTAGGCGCTTAAGCTTGAGTGAGCAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATAGTCAGATTTACGCACAACAATATTCTCAGAGTGTATCCAAAAGGAACACGTCTCACCTCCTCAAATTACAAACCACACATAGGGTGGACGTACGGAGCTCAGATGGTTGCGTTTAACATGCAGGGGCATGGTAAATCACTTTGGTACATGCAAGGAATGTTTAGATCAAATGGTGGGTGCGGTTATGTGAAAAAGCCTGACTTTCTAATTCAAAAAGGTCCGCATGATGAGGTTTTTGATCCTAAAATAGCATTACCAGTGAAAAAAACATTAAAGGTAAAAGTCTACCTGGGAAAAGGTTGGAGCTCAGATTTCAGCCCATCAGACTTTGATAGTTACTCACCACCAGACTTTTATGTAAAGGTTTGTATCGTTGGAGTTCCGGCTGATATGATCAAGAAGAAAACAAGTGTAATTTCAAATAATTGGTTTCCTGTATGGAACGAAGAGTTTGATTTCCCTTTAACCGTTCCAGAGCTGGCCTTGCTCCGCGTAGAAGTTCGAGAAGAAGATAAGCATCAAAAGGATGACTTCGGTGGACAGACGTGTTTGCCAGTCTCAGAACTAAAATCTGGATTCCGATCTGTCCCTCTGTATGATGAAAAGGGTGACAAATATAAATCTGTGAAGCTTTTAATGCGATTTCAGTTTAGATGA 1692 0.4249 MFEEFHFTMATHNYKVFSCFNRKFTVTEPEPPPDVQKAFSEFSEGASSMSADQLLQFLAEHQGEVNCTVSDSEQILQQSRKEDGETGFDLHYFFHFLQDSDLNVPLKSQVHHDMNAPMSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQRGVRVIELDLWPNSDKDDIDVVHGRTLTTPVSLLQCLKSIKEYAFVKSQYPLVITLEDHLTPDLQAKVAKMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESSEKESADEVSSLRENANEQRTDNEVSILTKSAPEYKRLITIHAGKPKGEIQDELKAAGKVRRLSLSEQALEKASESYGADIVRFTHNNILRVYPKGTRLTSSNYKPHIGWTYGAQMVAFNMQGHGKSLWYMQGMFRSNGGCGYVKKPDFLIQKGPHDEVFDPKIALPVKKTLKVKVYLGKGWSSDFSPSDFDSYSPPDFYVKVCIVGVPADMIKKKTSVISNNWFPVWNEEFDFPLTVPELALLRVEVREEDKHQKDDFGGQTCLPVSELKSGFRSVPLYDEKGDKYKSVKLLMRFQFR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01720 563 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 325 413 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu6g01720 563 SUPERFAMILY PLC-like phosphodiesterases 112 416 IPR017946 GO:0006629|GO:0008081
Vimu6g01720 563 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 328 414 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu6g01720 563 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 112 256 - -
Vimu6g01720 563 Gene3D Phosphatidylinositol (PI) phosphodiesterase 109 427 IPR017946 GO:0006629|GO:0008081
Vimu6g01720 563 ProSiteProfiles C2 domain profile. 416 545 IPR000008 -
Vimu6g01720 563 Pfam Phosphatidylinositol-specific phospholipase C, X domain 114 256 IPR000909 -
Vimu6g01720 563 FunFam Phosphoinositide phospholipase C 109 428 - -
Vimu6g01720 563 Gene3D C2 domain 428 563 IPR035892 -
Vimu6g01720 563 FunFam Phosphoinositide phospholipase C 430 563 - -
Vimu6g01720 563 Gene3D - 30 108 - -
Vimu6g01720 563 MobiDBLite consensus disorder prediction 259 286 - -
Vimu6g01720 563 SMART plcy_3 299 415 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu6g01720 563 CDD PI-PLCc_plant 111 402 - -
Vimu6g01720 563 SMART plcx_3 112 256 IPR000909 -
Vimu6g01720 563 Pfam C2 domain 435 537 IPR000008 -
Vimu6g01720 563 CDD C2_PLC_like 433 563 - -
Vimu6g01720 563 SMART C2_3c 435 543 IPR000008 -
Vimu6g01720 563 MobiDBLite consensus disorder prediction 260 284 - -
Vimu6g01720 563 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 435 562 IPR035892 -
Vimu6g01720 563 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 16 562 IPR001192 GO:0035556
Vimu6g01720 563 PRINTS Phospholipase C signature 529 539 IPR001192 GO:0035556
Vimu6g01720 563 PRINTS Phospholipase C signature 353 374 IPR001192 GO:0035556
Vimu6g01720 563 PRINTS Phospholipase C signature 117 135 IPR001192 GO:0035556
Vimu6g01720 563 PRINTS Phospholipase C signature 143 163 IPR001192 GO:0035556
Vimu6g01720 563 PRINTS Phospholipase C signature 374 392 IPR001192 GO:0035556
Vimu6g01720 563 PRINTS Phospholipase C signature 240 257 IPR001192 GO:0035556
Vimu6g01720 563 SUPERFAMILY EF-hand 13 114 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01720 Vimu-Chr6 15713184 15720339 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01720 3 562 Acyl Lipid Metabolism Gene Families AT2G40116 59.278 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01720 K05857 - gmx:100786997 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01720 6 15713184 15720339 Vimu1g00910 1 6353519 6358502 ECH
Vimu6g01720 6 15713184 15720339 Vimu6g01720 6 15713184 15720339 ECH
Vimu6g01720 6 15713184 15720339 Vimu1g00910 1 6353519 6358502 PCT