Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00910 ATGACCAGCGTCACCTACGGCTACAAAATGTTCAAGTACTTCAACAAAACCTACGCCGTCTCCGAGCAGGCCCCTCCGCCGGACGTCAAGGACGCATTCTCCCTCTTTGCCGAAGGCGCCGACGTCATGTCCGCCGACCAGCTCCTCCGCTTTCTGCACGAACACCAACTCGAATTGGACTACACCGCAGAAGATTCCAACCGCGTCGTCGAAACCGTCCTGCAATCGCGCACACAAAACGCCGAATGCGACTCCGACAACAACGGTCTAACGCTCGACGAGTTCTTCCGCTTCTTGTTCCTCGTCGATTTCAACGATCCCCTCAAATCCAAGGTACATCAAGATATGAATGCTCCGTTGTCACATTATTTCATATATACAGGGCACAATTCCTATCTGACTGGGAATCAGCTGAGCAGCGATTGCAGTGATGTGCCAATAATAAAGGCTTTGCAACGAGGTGTGCGAGTAATTGAACTAGATTTATGGCCAAATTCAACTAAAGATGATATAGACGTCGTTCATGGAAGGACACTTACTGCTCCTGTCTCACTTATCCAGTGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTGAGTACCCACTAATTCTAACTTTAGAAGACCACCTTACACCAATTCTTCAAGCTAAAGTTGCAGAGATGTTAGCTCAAGTATTTGGAGATATGTTATACTACCCAGAGACGGATCTTCTCACAGAATTTCCCACACCAGAGTCGGTGAAAGGTCGAATTCTTATATCAACCAAACCACCATCAAAAGAATATCTTCAATCCAAGCAATTCAAGGATAGTGACAGTGAGAGGGAATCAACTGAAGAATTATCGCCATGCGTTATCAGTGAATTGGAAGCTGCTGCTGCTGCTGATGAAAAGTCCAATGGAAATGATGTTGATGAGGAAAGCTTGAATGCCCGTGATAAAAAACCAGACCAACAGAGAGCACCAGAGTACAATCGTTTAATTACAATCCATGCTGGGAAGCCAAAGGGTCCTGTAAAGGACCACTTAAATGTTGTTGGGGGTGTAAGGCGCTTGAGCTTGAGCGAGCAGGAACTTGAAAAAGCTTCTACCACTTATGGATCTGACATTGTTAGGTTTACACAGAAGAATATTATCAGGGTGTATCCAAAGGGAACACGAGTTAACTCCTCAAATTACAGGCCACATATAGGATGGATTTACGGAGCTCAGATGGTAGCATTTAACATGCAGGGGCATGGAAAATCACTCTGGTATATGCAAGGGATGTTTAGAGCGAATGGCGGTTGTGGTTATGTGAAAAAGCCTTCATTTCTGATAGAAGAAGGCCCAGATGATGAGGTTTTTGATCCTAAAAAACCAATGCCAGTGCAAAAGACATTGATGGTAAAAGTGTACATGGGAAACGGGTGGAGCACAGATTTCAGTAAAACACACTTCGATGCATTCTCTCCGCCGGACTTTTACACAAAGGTTTGCATTGTTGGAGTACCTGCTGATAAAGTGAATAAGAAGACGAAGATAATTAATGATGATTGGTTTCCAGTTTGGGATGAAGAGTTTGAATTTCCTTTGTGTGTTCCAGAACTAGCTTTACTTTGGATAGAGGTTCGAGAGTACGATATGCATGAAAAGGATGACTTTGGCGGCCAATCATGTTTACCAATCTCTGAGCTAAGATCTGGTTTCCGGGTAATCCCTCTATTTGATGAGAAGGGCGAGCAATTAAAATCTGTAAAGCTTTTAATGCGGTTTCAGTTCAAATGA 1773 0.4371 MTSVTYGYKMFKYFNKTYAVSEQAPPPDVKDAFSLFAEGADVMSADQLLRFLHEHQLELDYTAEDSNRVVETVLQSRTQNAECDSDNNGLTLDEFFRFLFLVDFNDPLKSKVHQDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQRGVRVIELDLWPNSTKDDIDVVHGRTLTAPVSLIQCLKSIKEYAFVKSEYPLILTLEDHLTPILQAKVAEMLAQVFGDMLYYPETDLLTEFPTPESVKGRILISTKPPSKEYLQSKQFKDSDSERESTEELSPCVISELEAAAAADEKSNGNDVDEESLNARDKKPDQQRAPEYNRLITIHAGKPKGPVKDHLNVVGGVRRLSLSEQELEKASTTYGSDIVRFTQKNIIRVYPKGTRVNSSNYRPHIGWIYGAQMVAFNMQGHGKSLWYMQGMFRANGGCGYVKKPSFLIEEGPDDEVFDPKKPMPVQKTLMVKVYMGNGWSTDFSKTHFDAFSPPDFYTKVCIVGVPADKVNKKTKIINDDWFPVWDEEFEFPLCVPELALLWIEVREYDMHEKDDFGGQSCLPISELRSGFRVIPLFDEKGEQLKSVKLLMRFQFK 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00910 590 ProSiteProfiles C2 domain profile. 443 572 IPR000008 -
Vimu1g00910 590 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu1g00910 590 MobiDBLite consensus disorder prediction 265 283 - -
Vimu1g00910 590 SMART plcx_3 114 258 IPR000909 -
Vimu1g00910 590 MobiDBLite consensus disorder prediction 264 284 - -
Vimu1g00910 590 CDD C2_PLC_like 461 590 - -
Vimu1g00910 590 Pfam C2 domain 462 564 IPR000008 -
Vimu1g00910 590 Pfam Phosphatidylinositol-specific phospholipase C, X domain 116 258 IPR000909 -
Vimu1g00910 590 SMART C2_3c 462 570 IPR000008 -
Vimu1g00910 590 SUPERFAMILY PLC-like phosphodiesterases 114 443 IPR017946 GO:0006629|GO:0008081
Vimu1g00910 590 PRINTS Phospholipase C signature 145 165 IPR001192 GO:0035556
Vimu1g00910 590 PRINTS Phospholipase C signature 556 566 IPR001192 GO:0035556
Vimu1g00910 590 PRINTS Phospholipase C signature 401 419 IPR001192 GO:0035556
Vimu1g00910 590 PRINTS Phospholipase C signature 380 401 IPR001192 GO:0035556
Vimu1g00910 590 PRINTS Phospholipase C signature 119 137 IPR001192 GO:0035556
Vimu1g00910 590 PRINTS Phospholipase C signature 242 259 IPR001192 GO:0035556
Vimu1g00910 590 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 10 589 IPR001192 GO:0035556
Vimu1g00910 590 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 355 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu1g00910 590 SMART plcy_3 326 442 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu1g00910 590 MobiDBLite consensus disorder prediction 301 323 - -
Vimu1g00910 590 MobiDBLite consensus disorder prediction 296 324 - -
Vimu1g00910 590 Gene3D Phosphatidylinositol (PI) phosphodiesterase 111 454 IPR017946 GO:0006629|GO:0008081
Vimu1g00910 590 Gene3D - 23 107 - -
Vimu1g00910 590 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 462 589 IPR035892 -
Vimu1g00910 590 Gene3D C2 domain 456 590 IPR035892 -
Vimu1g00910 590 FunFam Phosphoinositide phospholipase C 457 590 - -
Vimu1g00910 590 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 114 258 - -
Vimu1g00910 590 FunFam Phosphoinositide phospholipase C 24 110 - -
Vimu1g00910 590 SUPERFAMILY EF-hand 16 116 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00910 Vimu-Chr1 6353519 6358502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00910 3 590 Acyl Lipid Metabolism Gene Families AT2G40116 59.836 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00910 K05857 - gmx:100777010 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01720 6 15713184 15720339 Vimu1g00910 1 6353519 6358502 ECH
Vimu1g00910 1 6353519 6358502 Vimu1g00910 1 6353519 6358502 ECH
Vimu6g01720 6 15713184 15720339 Vimu1g00910 1 6353519 6358502 PCT