Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01708 ATGGCGGCCGCTAACGCTCCGATCGCCATGAGAGAAGCTCTCACTGTGAGTTCTCTGCGCTCTTCGTTTTCTCTCGATTTCTTGAGCTTAATTCGGAACTCCAGTTCACCTGCTATCTTTATATCCGATAATAACCATCAAAGTTTTGCAAGTCACTCTTACGCTTTACTAAACTTTTATTTTCCGAATGGAGTGTTCCGCAACAAATTCGATCGTGCTTTGCCGAGCATTGGCATAAATCCGCAGTTCATCACGTTCACGCATGTGACGATGGAGTCCGATAAGTATATATGCGTTCGAGAAACGGCTCCGCAGAATAGTGTGGTTATCGTTGATATGAACATGCCGAATCAGCCTTTGAGGAGGCCTATTACTGCAGATTCCGCTCTTATGAATCCCAATTCCAGAATCCTTGCCTTGAAAGCTCAACTCCAAGGAACAACTCAAGACCACCTACAAATTTTTAACATTGAAATGAAAGCGAAGATGAAATCCTATCAGATGCCCGAGCAGGTGGTCTTTTGGAAATGGATTACCCCCAAGTTGTTGGGTCTTGTGACACAAACCTCTGTATACCATTGGTCAATTGAAGGTGACTCAGAACCTGTCAAGATGTTTGAGAGAACAGCGAACTTAGCAAACAATCAAATAATTAATTATCGATGTGATCCTTCAGAAAAATGGTTGGTCTTGATTGGTATTGCTCCAGGTTCCCCTGAGAGGCCACAATTGGTTAAAGGAAACATGCAGCTCTTTTCTGTGGATCAACAACGAAGCCAGGCTCTTGAAGCGCATGCTGCATCATTTGCTCAATTTAAAGTTCCTGGGAATGAAAATCCTTCTATTTTGATTTCTTTTGCCACTAAGACACTTAATGCTGGTCAAATCATATCCAAGTTGCATGTTATTGAGCTGGGTGCTCAGCCAGGGAAGCCATCGTTTACAAAGAAACAAGCTGACCTTTTCTTTCCCCCAGATTTTGCTGATGATTTTCCAGTTGCCATGCAGATATCCCACAAATACAGTTTGATTTATGTGATTACGAAACTTGGTCTCCTATTTGTCTATGATTTGGAAACTGCTACTGCTGTATATAGGAACAGAATTAGTCCTGATCCTATATTTTTGACATCAGAAGCTACATCAGTTGGAGGCTTTTATGCTATTAACAGGAGAGGCCAGGTGTTATTGGCTACTGTTAATGAGCAAACGATTGTGAATTTTGTCAGTGGTCAACTAAACAATTTGGAGCTAGCGGTTAATCTTGCCAAGCGAGGAAATCTTCCTGGTGCTGAGAAATTGGTGGTTGAACGATTCCATGAACTGTTTGCCCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCAGCGGAGTCTCCACAAGGAATCCTTCGCACTCCTGATACAGTTGCAAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTATTGCAGTATTTTGGAACACTTCTGACAAGAGGAAAGCTGAATGCCTTTGAGTCATTAGAATTGTCAAGGCTGGTAGTAAACCAGAACAAGAAAAACCTTTTGGAGAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAACTAGGAGATCTTGTAAAGACTGTGGATAATGATCTTGCTTTAAAAATATACATCAAAGCCAGAGCAACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAATTTGACAAGATTCTAATATACTCTAAGCAGGTTGGCTACACACCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGATCAGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGTCCAGTTGATTATAACACCATAACTGATTTATTTCTTCAGAGAAATCTGATCCGTGAGGCAACTGCCTTTCTCCTAGATGTTCTGAAACCAAATCTACCAGAACATGGGTTCCTTCAAACTAAGGTGTTGGAGATAAATCTGGTTACTTTCCCTAATGTTGCAGATGCAATTTTGGCTAATGGCATGTTCAGTCATTATGACCGTCCTCGTATTGCCCAACTTTGTGAAAAAGCTGCTCTTTATGTGCGAGCTTTGCAACATTACACTGAGTTGTCAGATATAAAACGTGTGATTGTGAATACACATGCAATTGAGCCACAGTCACTTGTTGAATTTTTTGGCACTCTATCACGAGAATGGGCATTAGAGTGCATGAAAGACTTATTGCTAGTCAATCTTAGAGGCAACCTACAGATTATTGTGCAGGTTGCCAAAGAATATTGTGAACAGTTGGGCATTGATGCCTGCATAAAGATTTTTGAGCAATTCAGGTCATATGAAGGACTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGTGAGGATCCTGACATTCACTTTAAGTACATTGAGGCAGCAGCGAAGACTGGTCAAATCAAAGAGGTTGAGCGTGTGACTAGAGAATCAAGTTTCTATGATGCTGAGAAAACAAAGAACTTTCTAATGGAGGCTAAGCTTCCCGATGCACGACCTCTGATTAATGTTTGTGACCGATTTGGATTTGTTCCAGATCTAACACACTATCTATACACAAGCAACATGCTTCGCTACATTGAAGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTCGTTGGGCAGCTTTTAGACGATGAGTGTCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCCTTACTGCCTGTGGAGCCCCTTGTGGAGGAGTGTGAGAAGAGGAATCGGCTTCGTTTGCTCACACAGTTTTTGGAACATCTTGTAAGCGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATCATCATTGATAGCAACAATAATCCGGAACATTTTCTCACTACCAACCCATACTATGATTCTCGAGTTGTGGGCAAATATTGTGAGAAACGTGATCCCACCTTAGCAGTTGTAGCTTATAGGCGTGGACAATGTGATGATGAACTTATCAATGTGACAAACAAAAATTCTTTGTTTAAACTACAAGCAAGATATGTTGTTGAGCGGATGGATGCTGATCTTTGGGACAAAGTTCTTAACCCTGATAATTCCTATAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCTCTGCCTGAAAGCAAGAGCCCTGAACAAGTATCTGCTGCTGTTAAGGCTTTCATGACTGCTGATCTACCTCATGAATTGATCGAGCTTCTTGAGAAGATTGTCCTTCAGAATTCTGCATTCAGTGGCAACTTTAATCTGCAGAATCTACTTATTTTAACAGCAATAAAGGCTGATCCATCCAGAGTTATGGATTATATTAATAGACTGGATAATTTTGATGGGCCTGCAGTGGGAGAAATGGCTGTTGAGGCTCAATTATATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTAAATGTCCAGGCAGTCAATGTCTTGTTAGACAATATTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTAAGGGAAGGACTAGTAAGTGATGCCATTGAGTCCTTTATACGAGCAGACGATACTACACAATTTTTGGATGTTATCCGTGCTGCTGAAGATGCCAATGTTTACCATGACCTGGTGAGATACTTGCTGATGGTTCGGCAGAAGACTAAAGAACCCAAGGTGGACAGTGAGCTCATTTATGCATATGCAAAGATTGATAGGCTCAGTGACATTGAGGAGTTCATTCTTATGCCAAATGTAGCCAATCTTCAAAATGTTGGTGACCGATTGTATGATGAAGAACTATATGAAGCTGCCAAAATCATATTTGCCTTTATATCTAACTGGGCCAAGTTAGCAGTTACACTTGTGAAGTTGAAACAGTTCCAAGGTGCAGTCGATGCAGCAAGGAAAGCTAACAGTGCAAAAACATGGAAGGAAGTTTGCTTTGCCTGTGTTGATGCAGAGGAGTTCCGTTTGGCCCAGATATGTGGGCTTAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAACGAGCTAATATCCCTCATGGAGAGTGGTTTAGGTTTAGAACGGGCACATATGGGTATCTTCACTGAGTTGGGAGTTCTATATGCTAGATATCGTCCTGAGAAGCTTATGGAACATATCAAACTATTTGCAACCCGGCTCAACATTCCAAAGCTTATAAGAGCTTGTGACGAACAACAACATTGGAAGGAGCTGACCTATTTGTACATTCAATATGACGAGTTTGATAATGCTGCAACAACCATCATGAACCATTCACCTGAAGCATGGGATCATATGCAATTCAAAGATGTTGTCGTCAAAGTTGCTAATGTTGAGTTGTATTACAAGGCCGTTCATTTCTATTTACAAGAACATCCTGATCTTATCAATGATGTTCTGAATGTCCTTGCTCTCCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGGCTGGTCATCTCCGTCTTGTCAAGCCATACATGGTTGCAGTTCAGAGTAACAATGTGTCTGCTGTTAATGAAGCCCTGAATGAAATATATGTAGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTGCATGATAACTTTGACCAAATAGGCCTTGCACAGAAGATTGAAAAGCATGAGCTTCTTGAGATGAGGCGGGTTGCTGCTTACATTTACAAGAAGGCAGGTAGATGGAAGCAGTCCATTGCATTGTCTAAAAAGGATAACCTTTACAAAGATGCCATGGAGACAGCTTCACAATCTGGTGACCGTGAACTTGCTGAGGAGTTACTTGTTTATTTCATTGATCAGGGAAAGAAAGAATGCTTTGCCTCGTGTCTATTTGTTTGCTATGATTTGATCCGGGCAGACATTGCTATCGAGTTGGCCTGGATGAACAACATGATTGACTTTGCCTTCCCATATCTCTTGCAGTTTATCCGCGAGTACACTGGCAAAGTTGATGAACTGGTGAAGGACAAGATTGAAGCTCAGAACCAAGTGAAGGCTAAAGAGCAAGAAGAGAAGGAAGTAATTGCACAACAGAATATGTATGCTCAGTTGTTGCCTCTTGCTTTGCCCGCACCACCAATGCCTGGAATGGGAGGAGGCTTTGCCCCTCCCCCTCCAATGGGTGGATTGGGGATGCCTCCAATGCCCCCTTTCGGTATGCCACCCATGGGCAGCAGCTACTGA 5280 0.4193 MAAANAPIAMREALTVSSLRSSFSLDFLSLIRNSSSPAIFISDNNHQSFASHSYALLNFYFPNGVFRNKFDRALPSIGINPQFITFTHVTMESDKYICVRETAPQNSVVIVDMNMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWITPKLLGLVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPSEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSILISFATKTLNAGQIISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAALYVRALQHYTELSDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGIDACIKIFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESSFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWDKVLNPDNSYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDTTQFLDVIRAAEDANVYHDLVRYLLMVRQKTKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFATRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIDQGKKECFASCLFVCYDLIRADIAIELAWMNNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQNQVKAKEQEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPMGGLGMPPMPPFGMPPMGSSY 1759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01708 1759 SUPERFAMILY ARM repeat 515 851 IPR016024 -
Vimu6g01708 1759 SMART CLH_2 1051 1196 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 SMART CLH_2 1346 1492 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 SMART CLH_2 758 900 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 SMART CLH_2 1200 1341 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 SMART CLH_2 905 1044 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 SMART CLH_2 609 751 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 SMART CLH_2 1495 1654 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Gene3D - 72 435 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Vimu6g01708 1759 FunFam Clathrin heavy chain 960 1111 - -
Vimu6g01708 1759 FunFam Clathrin heavy chain 63 435 - -
Vimu6g01708 1759 SUPERFAMILY ARM repeat 959 1124 IPR016024 -
Vimu6g01708 1759 PIRSF CHC 7 1737 IPR016341 GO:0016192|GO:0032051|GO:0071439
Vimu6g01708 1759 Coils Coil 1535 1555 - -
Vimu6g01708 1759 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1346 1492 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Coils Coil 1675 1709 - -
Vimu6g01708 1759 FunFam Clathrin heavy chain 1112 1254 - -
Vimu6g01708 1759 SUPERFAMILY ARM repeat 1111 1253 IPR016024 -
Vimu6g01708 1759 SUPERFAMILY ARM repeat 403 558 IPR016024 -
Vimu6g01708 1759 Pfam Clathrin propeller repeat 212 255 IPR022365 -
Vimu6g01708 1759 Pfam Clathrin propeller repeat 78 114 IPR022365 -
Vimu6g01708 1759 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1200 1341 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 609 755 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Pfam Region in Clathrin and VPS 908 1041 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Pfam Region in Clathrin and VPS 759 898 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Pfam Region in Clathrin and VPS 1350 1489 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Pfam Region in Clathrin and VPS 1204 1339 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Pfam Region in Clathrin and VPS 1498 1637 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Pfam Region in Clathrin and VPS 1051 1189 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Pfam Region in Clathrin and VPS 615 748 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 FunFam Clathrin heavy chain 517 845 - -
Vimu6g01708 1759 FunFam Clathrin heavy chain 1600 1696 - -
Vimu6g01708 1759 Pfam Clathrin, heavy-chain linker 402 425 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Vimu6g01708 1759 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1495 1638 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Gene3D - 1600 1696 - -
Vimu6g01708 1759 FunFam Clathrin heavy chain 1255 1594 - -
Vimu6g01708 1759 SUPERFAMILY Clathrin heavy-chain terminal domain 73 401 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Vimu6g01708 1759 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 758 900 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Pfam Clathrin-H-link 427 492 - -
Vimu6g01708 1759 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1051 1196 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 PANTHER CLATHRIN HEAVY CHAIN RELATED 72 1556 - -
Vimu6g01708 1759 SUPERFAMILY ARM repeat 1254 1589 IPR016024 -
Vimu6g01708 1759 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 905 1044 IPR000547 GO:0006886|GO:0016192
Vimu6g01708 1759 Gene3D Tetratricopeptide repeat domain 959 1114 IPR011990 GO:0005515
Vimu6g01708 1759 Gene3D Tetratricopeptide repeat domain 1255 1594 IPR011990 GO:0005515
Vimu6g01708 1759 Gene3D Tetratricopeptide repeat domain 1115 1254 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01708 Vimu-Chr6 15614731 15626608 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01708 K04646 - gmx:547986 3167.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01708 6 15614731 15626608 Vimu1g00891 1 6107848 6121274 ECH
Vimu6g01708 6 15614731 15626608 Vimu6g01708 6 15614731 15626608 ECH
Vimu6g01708 6 15614731 15626608 Vimu1g00891 1 6107848 6121274 PCT