Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00891 ATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACTATAACTGATCTCTTTCTTCAGAGAAATTTGATCCGAGAGGCAACCGCTTTTCTCCTTGATGTTTTAAAACCAAACCTACCAGAGCATGGGTTCCTTCAGACAAAGGTGTTGGAGATAAATCTGGTGACTTTCCCTAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCCGGCCTTTACGTGCGAGCTTTGCAACATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTTAATACACATGCAATTGAACCTCAGTCACTTGTAGAGTTTTTTGGTACACTGTCACGAGAATGGGCATTAGAGTGCATGAAGGACCTACTGCTGGCAAATCTTAGGGGGAACCTTCAGATCATTGTGCAGGTTGCTAAAGAATATTGTGAACAATTAGGGGTTGAAGCCTGCATAAAAATTTTTGAGCAGTTTAGGTCGTATGAGGGATTGTATTTTTTCCTTGGATCTTACTTGAGCTCCAGCGAGGATCCTGACATTCACTTTAAGTACATTGAGGCAGCTGCAAAGACCGGTCAAATCAAGGAGGTTGAGCGTGTGACAAGAGAATCAAATTTCTATGATGCTGAGAAAACCAAAAACTTTCTTATGGAGGCTAAGCTTCCAGATGCACGGCCTTTGATAAATGTTTGCGATCGTTTTGGATTTGTTCCAGATCTAACTCACTATCTGTACACAAACAACATGCTTCGTTACATTGAAGGCTATGTTCAGAAGGTAAACCCAGGGAATGCTCCTTTAGTTGTGGGGCAGCTGCTGGATGATGAATGCCCAGAAGATTTTATCAAGGGCTTGATTCTTTCTGTTCGTTCGTTACTGCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGGCTTCGTTTGCTCACACAATTCTTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATTATCATTGATAGCAACAACAACCCAGAACATTTCCTCACGACCAACCCATACTACGATTCTAGAGTTGTGGGCAAGTACTGTGAGAAACGTGATCCCACCTTAGCTGTCGTAGCTTATCGGCGAGGACAATGTGATGATGAACTTATCCATGTCACTAACAAAAATTCTTTGTTCAAACTGCAAGCAAGATATGTTGTTGAGAGAATGGATGGTGATCTGTGGGCCAAAGTTCTTGATCCTGATAATGACTATAGAAGGCAACTTATTGATCAAGTTGTATCCACTGCTTTGCCAGAAAGCTCAAGCCCTGAGCAAGTTTCTGCAGCGGTTAAGGCTTTCATGACAGCTGATCTGCCTCATGAACTGATTGAACTTCTTGAGAAGATCGTCCTTCAGAATTCTGCATTCAGTGGGAACTTTAATTTGCAGAATCTTCTTATTTTGACAGCGATAAAGGCCGATCCGTCCAGAGTTATGGATTATGTCAATAGGTTGGATAATTTTGATGGACCTGCAGTTGGAGAAATGGCTGTAGAAGCTCAGTTATATGAGGAAGCATTTGCCATTTTTAAGAAGTTCAACTTGAATGTTCAAGCAGTCAATGTGTTGCTTGATAATATTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTCAGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTCAGGGATGGGCTAGTAAGTGATGCAATTGAATCATTTATACGAGCAGATGATTCTACACAATTTTTAGATGTTATCCGTGCTGCTGAAGATGCCAATGTTTACCATGACTTGGTGAAATACTTGCTGATGGTAAGGCAGAAAACAAAAGAACCCAAGGTTGACAGTGAGCTCATTTATGCATATGCAAAGATTGATAGGCTAAGTGACATTGAGGAGTTCATTCTTATGCCAAATGTTGCCAATCTTCAAACTGTTGGTGACCGGTTGTATGATGAAGCATTATACGAGGCTGCAAAAATCATATTTGCTTTTATATCTAACTGGGCCAAGTTGGCCATCACACTGGTCAAATTAAATCAGTTTCAAGGTGCTGTTGATGCAGCAAGGAAAGCTAACAGCTCAAAGACATGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCAGAGGAGTTTCGGTTGGCCCAGATTTGTGGACTGAACATAATTATTCAGGTGGATGACTTGGAAGAAGTCAGTGAGTATTACCAAAATAGAGGTTGCTTCAATGAGCTAATATCTCTCATGGAGAGTGGTTTAGGGTTAGAAAGGGCTCATATGGGCATCTTTACTGAGCTTGGAGTTCTATATGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTCTCAACTAGGCTCAATATTCCCAAACTCATACGAGCTTGCGATGAACAACAGCACTGGAAAGAATTGACCTATTTGTATATACAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTTAAAGTTGCTAATGTGGAATTGTATTATAAGGCTGTCCACTTCTACTTGGAAGAGCATCCAGATCTTATAAATGATGTTCTGAATGTCCTTGCACTTCGTGTGGATCATGCTCGTGTTGTTGACATCTTGCGGAAGGCCGGTCACCTTCGCCTTGTGAAACCATATATGGTTGCGGTTCAAAGCAACAATGTATCTGCTGTTAATGAAGCATTGAATGAGATATATGTTGAGGAGGAGGATTATGATAGGCTGCGCGAGTCAATTGATTTGTATGATAACTTTGATCAAATAGGCCTTGCCCAAAGGATTGAAAAGCATGAGCTTCTTGAGATGAGACGAGTTGCTGCTTATATTTACAAGAAGGCAGGTAGGTGGAAGCAGTCTATTGCTTTGTCAAAGAAGGATAACCTATACAAAGACGCCATGGAGACAGCCTCACAATCTGGAGAACGTGAACTTGCTGAGGAGTTGCTTGTTTATTTCATCGATCAGCCAGAGCATGTTAGTCTTACAACTCAAATTACTGATCGAAGGATTGTCATCGAAGCTTCTTACTTATGGCTTCAAGCTTTTTTGTTTGGAAAGAAGGAATGTTTTGCCTCATGTCTATTCGTTTGCTATGATTTGATCCGGGCAGACATTGTTCTTGAACTTGCTTGGATACACAATATGGTGGACTTTGCCTTCCCATATCTATTGCAGTTATTGTTTCAGCCTTTCATTGAGCTGGAATGGATCAATATATTTCCGTCATATCCAAAGTTTATTCGTGAGTACACTGGCAAAGTCGATGAGCTAGTGAAGGACAAAATTGAAGCACAAAACGAAGTGAAGGCTAAGGAGCATGAAGAAAAGGAAGTAGTTGCACAGCAGAACATGTATGCTCAATTATTGCCCCTTGCTTTGCCTGCACCACCAATGCCTGGAATGGGAGGCCCAGTAGGAATGGGAATGGGAGGAGGCTTTGCTCCTCCCCCTCCAATGGGTGGACTTGGGATGCCCCCAATGCCTCCATACGGCATGCCACCCATGGGCAGTAGCTACTGA 3636 0.4202 MMSQMEGGSPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLANLRGNLQIIVQVAKEYCEQLGVEACIKIFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELIHVTNKNSLFKLQARYVVERMDGDLWAKVLDPDNDYRRQLIDQVVSTALPESSSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLRDGLVSDAIESFIRADDSTQFLDVIRAAEDANVYHDLVKYLLMVRQKTKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQTVGDRLYDEALYEAAKIIFAFISNWAKLAITLVKLNQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLEEHPDLINDVLNVLALRVDHARVVDILRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLYDNFDQIGLAQRIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQPEHVSLTTQITDRRIVIEASYLWLQAFLFGKKECFASCLFVCYDLIRADIVLELAWIHNMVDFAFPYLLQLLFQPFIELEWINIFPSYPKFIREYTGKVDELVKDKIEAQNEVKAKEHEEKEVVAQQNMYAQLLPLALPAPPMPGMGGPVGMGMGGGFAPPPPMGGLGMPPMPPYGMPPMGSSY 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00891 1211 FunFam Clathrin heavy chain 650 989 - -
Vimu1g00891 1211 FunFam Clathrin heavy chain 507 649 - -
Vimu1g00891 1211 FunFam Clathrin heavy chain 355 506 - -
Vimu1g00891 1211 Coils Coil 930 950 - -
Vimu1g00891 1211 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 153 295 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 PIRSF CHC 1 1185 IPR016341 GO:0016192|GO:0032051|GO:0071439
Vimu1g00891 1211 SMART CLH_2 153 295 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 SMART CLH_2 300 439 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 SMART CLH_2 446 591 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 SMART CLH_2 4 146 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 SMART CLH_2 890 1033 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 SMART CLH_2 741 887 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 SMART CLH_2 595 736 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 SUPERFAMILY ARM repeat 354 521 IPR016024 -
Vimu1g00891 1211 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 446 591 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 Gene3D - 995 1140 - -
Vimu1g00891 1211 Pfam Region in Clathrin and VPS 599 734 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 Pfam Region in Clathrin and VPS 893 1029 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 Pfam Region in Clathrin and VPS 154 293 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 Pfam Region in Clathrin and VPS 446 583 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 Pfam Region in Clathrin and VPS 745 884 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 Pfam Region in Clathrin and VPS 303 436 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 Pfam Region in Clathrin and VPS 8 143 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 300 439 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 4 150 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 SUPERFAMILY ARM repeat 649 984 IPR016024 -
Vimu1g00891 1211 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 890 1033 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 PANTHER CLATHRIN HEAVY CHAIN RELATED 2 951 - -
Vimu1g00891 1211 Coils Coil 1119 1146 - -
Vimu1g00891 1211 SUPERFAMILY ARM repeat 506 648 IPR016024 -
Vimu1g00891 1211 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 741 887 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 Gene3D Tetratricopeptide repeat domain 650 989 IPR011990 GO:0005515
Vimu1g00891 1211 Gene3D Tetratricopeptide repeat domain 510 649 IPR011990 GO:0005515
Vimu1g00891 1211 Gene3D Tetratricopeptide repeat domain 355 509 IPR011990 GO:0005515
Vimu1g00891 1211 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 595 736 IPR000547 GO:0006886|GO:0016192
Vimu1g00891 1211 SUPERFAMILY ARM repeat 12 246 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00891 Vimu-Chr1 6107848 6121274 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00891 K04646 - gmx:100786617 2101.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01708 6 15614731 15626608 Vimu1g00891 1 6107848 6121274 ECH
Vimu1g00891 1 6107848 6121274 Vimu1g00891 1 6107848 6121274 ECH
Vimu6g01708 6 15614731 15626608 Vimu1g00891 1 6107848 6121274 PCT