Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01700 ATGCAGCAAGACTGGCGATCACGTTTGGCTTTGGCGAGGCGAGAAAAGTTCAATCGTGGGGTGAAGATGGAGGTGGGTGCAATAGTAAACCCAACTCACTCTTCAATCTCTCCAACTCACGTAAACTGCCTCCGAATCCCATCGATGGAAAACTCGGACGAAAGAAACGAATCACTTCCTTTCTCTCCAAACCCTAACAATGCCGACGACGACGAAATCGACGAACAAGAAGACGAAGAGGAAGAGGAAGAAGATGACGGCCACGACGACGTCGTTTCACACGAGCCGTACAATCGGAACGACCGATCCTCATTGTCGAGTTTACACGAGCAGCGTTTAAAGCTTGAAGCTCTCTCTCGGCGATTGGCTTCGGAGCTGGTCCCTATCCGCGTCCACGATGTGCTGATTCGAGGCAACACCAAGACCAAGGATTGGGTGATCGAGGCGGAGCTCAAGCTTCTCCAGGACGCTTCCACCGTGCAGGAGCTCATTCGCGCCTCCGAAATCGCCCTCGCCAGGCTCCGCAGCCTCGAAATTTTCGAGTCCACCGAGCTCACGCTCCAGGCTGGGCCGCCGGAGCTGCCTCACACCGCCAATGTTATCGTCGACGTCGTCGAGACCGCGAACAAAGTTTCCGGCGAATTTGGCGTTTACACCAAACCCTCGACAAGTTCGTGGACTGCTGAAGGTGGTCTTAAGTACAAAAACTTGTTAGGTTATGGTGATCTATGGGATGCCTCTTTGGCTTATGGTGGCAACCAAGCAACAGAGGTGAGTGTAGGAATGTTTGCTCCAAGACTGAAAGGGTTGTTAACTCCTCTTGTGGCACGACTTTCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAGCAGCTGTTAGGATTGTCTCTTGGCTTAATCTCAACCAGGCACCATGACTTAGTCTACACTCTTGGATGGCGTACCTTGACTGATCCATCTCAAATGTCATCCAGGTCTATAAGGAGGCAGCTTGGGCATGGTTTATTATCATCTTTGAAGTATACATTTAAAATTGACAGGAGAAACTCGCCAATTAGGCCTACAAGTGGATATGCTTTTCTTTCCACTACTCACTTTGGTGGCCTTACACCAGATCATCGGAGCTTGCGATTCCTGCGCCAGGAATTTGATGTTCGCTGTGCCATCCCCCTTCCGTTTTATAACACAGCTCTTAACCTTGGGATTTCAGCTGGTGCCATTTTTCCATGGGGGCATGACTTCATGAACAAGCCATCTCCTCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACTCTGGGAGGGCCAATAACATTGTGGGGATTTAAAACTAGGGGACTAGGTCCTACTGAACCACGAAGGAGAATTAGAAACGAAATTGTTGATGACAATGACGATTCCTCTAAACGGGACTTCATTGGAGGAGATGTTGCTGTTACAGCATTTGCAGACCTGTCTTTTGATCTCCCAATTAGGTGGTTGAGAAATCATGGAATCCATGGTCATCTTTTTGCTGGTGCTGGGAATACGGCAAAATTGACTCAGTATGAATATAGGCGCTTTTCACCTCGGAGGTTCTTAGAATCATTCCGAACATCTGTTGGATGTGGTTTTGTTGTGCCTACTAAACTTTTTCGCCTAGAGGGTAACTTCTACCACGTGCTCAAGCAGGATGAATATGACCGTGGGAAGACAGGATTTAGGTTCAGCTTCTCAGCTCCTTCTTAG 1749 0.4837 MQQDWRSRLALARREKFNRGVKMEVGAIVNPTHSSISPTHVNCLRIPSMENSDERNESLPFSPNPNNADDDEIDEQEDEEEEEEDDGHDDVVSHEPYNRNDRSSLSSLHEQRLKLEALSRRLASELVPIRVHDVLIRGNTKTKDWVIEAELKLLQDASTVQELIRASEIALARLRSLEIFESTELTLQAGPPELPHTANVIVDVVETANKVSGEFGVYTKPSTSSWTAEGGLKYKNLLGYGDLWDASLAYGGNQATEVSVGMFAPRLKGLLTPLVARLSMLSQDWQEFSSYKEQLLGLSLGLISTRHHDLVYTLGWRTLTDPSQMSSRSIRRQLGHGLLSSLKYTFKIDRRNSPIRPTSGYAFLSTTHFGGLTPDHRSLRFLRQEFDVRCAIPLPFYNTALNLGISAGAIFPWGHDFMNKPSPLPERFYLGGDFSPVCTLGGPITLWGFKTRGLGPTEPRRRIRNEIVDDNDDSSKRDFIGGDVAVTAFADLSFDLPIRWLRNHGIHGHLFAGAGNTAKLTQYEYRRFSPRRFLESFRTSVGCGFVVPTKLFRLEGNFYHVLKQDEYDRGKTGFRFSFSAPS 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01700 582 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 76 578 IPR039910 -
Vimu6g01700 582 Pfam Omp85 superfamily domain 236 579 IPR000184 GO:0019867
Vimu6g01700 582 FunFam Outer membrane OMP85 family protein 218 580 - -
Vimu6g01700 582 Coils Coil 66 86 - -
Vimu6g01700 582 MobiDBLite consensus disorder prediction 68 89 - -
Vimu6g01700 582 FunFam Outer membrane OMP85 family protein 128 207 - -
Vimu6g01700 582 MobiDBLite consensus disorder prediction 51 106 - -
Vimu6g01700 582 Gene3D membrane protein fhac 128 207 - -
Vimu6g01700 582 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 212 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01700 Vimu-Chr6 15557413 15562473 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01700 K07277 - gmx:100785408 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01700 6 15557413 15562473 Vimu6g01700 6 15557413 15562473 ECH
Vimu6g01700 6 15557413 15562473 Vimu1g00880 1 6005962 6009578 PCT